Data-driven optimization of sampling patterns for MR brain T1ρ mapping.

Abstract

The goal of this study was to apply a fast data-driven optimization algorithm, called bias-accelerated subset selection, for MR brain T1ρ mapping to generate optimized sampling patterns (SPs) for compressed sensing reconstruction of brain 3D-T1ρ MRI. Five healthy volunteers were recruited, and fully sampled Cartesian 3D-T1ρ MRIs were obtained. Variable density (VD) and Poisson disc (PD) undersampling was used as the input to SP optimization process. The reconstruction used 3 compressed sensing methods: spatiotemporal finite differences, low-rank plus sparse with spatial finite differences, and low rank. The performance of images and T1ρ maps using PD-SP and VD-SP and their optimized sampling patterns (PD-OSP and VD-OSP) were compared to the fully sampled reference using normalized root mean square error (NRMSE). The VD-OSP with spatiotemporal finite differences reconstruction (NRMSE=0.078) and the PD-OSP with spatiotemporal finite differences reconstruction (NRMSE=0.079) at the highest acceleration factors (AF=30) showed the largest improvement compared to the respective nonoptimized SPs (VD NRMSE=0.087 and PD NRMSE=0.149). Prospective undersampling was tested at AF=4, with VD-OSP NRMSE=0.057 versus PD-OSP NRMSE=0.060, with optimized sampling performing better that input PD or VD sampling. For brain T1ρ mapping, the VD-OSP with low rank reconstruction for AFs <10 and VD-OSP with spatiotemporal finite differences for AFs >10 perform better. The study demonstrated that the appropriate use of data-driven optimized sampling and suitable compressed sensing reconstruction technique can be employed to potentially accelerate 3D T1ρ mapping for brain imaging applications.