Abstract
In this application system, we extended our domain specific Protein-QL and Protein-OODB into object-oriented database, relational database and XML database to manage protein structure data. We use EyeDB, Oracle and Oracle XML as the base databases to communicate with Protein-OODB. Our system uses RMI to return the results back to the clients so that transactions can be conveniently transformed between client and server. In this system, users can easily master our Protein-QL query language and get help from our online Help services. This system is implemented for protein domain, but it can be easily extended into other biological domains to build a Bio-OODBMS. In decade years, the protein data has been growing in an exponential rate since more and more advanced experimental techniques occur. So protein scientists have to solve the problem how to efficiently manage the huge amount of data of protein. Present databases can not meet this need since they neither match the structure of protein data nor have built-in data types and functions. In this application paper, we provide a system with built-in data types and built-in domain specific functional operators that based on Protein-OODB system to solve this problem. This new system has three components: a client API, a Middleware (including a RMI server, a protein
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