Abstract

<div>Abstract<p>P-MartCancer is an interactive web-based software environment that enables statistical analyses of peptide or protein data, quantitated from mass spectrometry–based global proteomics experiments, without requiring in-depth knowledge of statistical programming. P-MartCancer offers a series of statistical modules associated with quality assessment, peptide and protein statistics, protein quantification, and exploratory data analyses driven by the user via customized workflows and interactive visualization. Currently, P-MartCancer offers access and the capability to analyze multiple cancer proteomic datasets generated through the Clinical Proteomics Tumor Analysis Consortium at the peptide, gene, and protein levels. P-MartCancer is deployed as a web service (<a href="https://pmart.labworks.org/cptac.html" target="_blank">https://pmart.labworks.org/cptac.html</a>), alternatively available via Docker Hub (<a href="https://hub.docker.com/r/pnnl/pmart-web/" target="_blank">https://hub.docker.com/r/pnnl/pmart-web/</a>). <i>Cancer Res; 77(21); e47–50. ©2017 AACR</i>.</p></div>

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