Abstract
Twenty one fully sequenced and well annotated insect genomes were used to construct genome content matrices for phylogenetic analysis and functional annotation of insect genomes. To examine the role of e-value cutoff in ortholog determination we used scaled e-value cutoffs and a single linkage clustering approach.. The present communication includes (1) a list of the genomes used to construct the genome content phylogenetic matrices, (2) a nexus file with the data matrices used in phylogenetic analysis, (3) a nexus file with the Newick trees generated by phylogenetic analysis, (4) an excel file listing the Core (CORE) genes and Unique (UNI) genes found in five insect groups, and (5) a figure showing a plot of consistency index (CI) versus percent of unannotated genes that are apomorphies in the data set for gene losses and gains and bar plots of gains and losses for four consistency index (CI) cutoffs.
Highlights
Twenty one fully sequenced and well annotated insect genomes were used to construct genome content matrices for phylogenetic analysis and functional annotation of insect genomes
The present communication includes (1) a list of the genomes used to construct the genome content phylogenetic matrices, (2) a nexus file with the data matrices used in phylogenetic analysis, (3) a nexus file with the Newick trees generated by phylogenetic analysis, (4) an excel file listing the Core (CORE) genes and Unique (UNI) genes found in five insect groups, and (5) a figure showing a plot of consistency index (CI) versus percent of unannotated genes that are apomorphies in the data set for gene losses and gains and bar plots of gains and losses for four consistency index (CI) cutoffs
Table with html sites for access to insect genomes Phylogenetic matrices in Nexus format Phylogeentic trees in Newick format Lists of FlyBase accessions for functional annotation of genes that are part of CORE genomes and UNIQUE genes Graphs of consistency index (CI) versus number unnannotated genes Raw data acquired from html download Phylogenetic matrices obtained by single linkage clustering approach Functional Annotation acquired from websites listed below Graphs obtained from phylogenetic analysis Nexus files; excel spreadsheets; Newick formatted tree files Not applicable
Summary
Twenty one fully sequenced and well annotated insect genomes were used to construct genome content matrices for phylogenetic analysis and functional annotation of insect genomes. Data for constructing insect genome content matrices for phylogenetic analysis and functional annotation Table with html sites for access to insect genomes Phylogenetic matrices in Nexus format Phylogeentic trees in Newick format Lists of FlyBase accessions for functional annotation of genes that are part of CORE genomes and UNIQUE genes Graphs of consistency index (CI) versus number unnannotated genes Raw data acquired from html download Phylogenetic matrices obtained by single linkage clustering approach Functional Annotation acquired from websites listed below Graphs obtained from phylogenetic analysis Nexus files; excel spreadsheets; Newick formatted tree files Not applicable
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