Abstract

This work aims to expand the knowledge of the area of data analysis through persistence homology and representations of directed graphs. To be specific, we looked for how we can analyze homology cluster groups using agglomerative Hierarchical Clustering algorithms and methods. Additionally, the Wine data, which is offered in R studio, was analyzed using various cluster algorithms such as Hierarchical Clustering, K-Means Clustering, and PAM Clustering. The goal of the analysis was to find out which cluster's method is proper for a given numerical dataset. We tried to find the agglomerative hierarchical clustering method by testing the data that will be the optimal clustering algorithm among these three; K-Means, PAM, and Random Forest methods. By comparing each model's accuracy value with cultivar coefficients, we concluded that K-Means methods are the most helpful when working with numerical variables. On the other hand, PAM clustering and Gower with Random Forest are the most beneficial approaches when using categorical variables. These tests can determine the optimal number of clustering groups, given the data set, and by doing the proper analysis. Using those the project, we can apply our method to several industrial areas such that clinical, business, and others. For example, people can make different groups based on each patient who has a common disease, required therapy, and other things in the clinical society. Additionally, people can expect to get several clustered groups based on the marginal profit, marginal cost, or other economic indicators for the business area.

Highlights

  • As society continues to become more technologically advanced, data collection has become significantly easier and is done in almost every facet of life

  • When studying clusters of data using persistence homology, we look at varying scales and view how clusters of data combine into larger clusters or vanish as we increase our scale

  • We compared each of the accuracy values that obtained by using three different clusters

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Summary

Introduction

As society continues to become more technologically advanced, data collection has become significantly easier and is done in almost every facet of life. We can collect data on nearly anything, from our favourite sports team's performance to the propagation of specific strains of the flu. Data collection isn't as much of a barrier as knowing how to interpret that data and find what is relevant in each data set. This is where data science and analysis come into the picture. In many cases, the tests that have been around for decades can't keep up with the sheer volume and magnitude of the data sets we have available

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