Abstract

Modern agent-based models (ABM) and other simulation models require evaluation and testing of many different parameters. Managing that testing for large scale parameter sweeps (grid searches), as well as storing simulation data, requires multiple, potentially customizable steps that may vary across simulations. Furthermore, parameter testing, processing, and analysis are slowed if simulation and processing jobs cannot be shared across teammates or computational resources. While high-performance computing (HPC) has become increasingly available, models can often be tested faster with the use of multiple computers and HPC resources. To address these issues, we created the Distributed Automated Parameter Testing (DAPT) Python package. By hosting parameters in an online (and often free) "database", multiple individuals can run parameter sets simultaneously in a distributed fashion, enabling ad hoc crowdsourcing of computational power. Combining this with a flexible, scriptable tool set, teams can evaluate models and assess their underlying hypotheses quickly. Here, we describe DAPT and provide an example demonstrating its use.

Highlights

  • Evaluating a new computational model requires testing many parameter sets and validating the results [1, 2], collectively called model exploration (ME) [3]

  • Tools to facilitate ME on high-performance computing (HPC) resources such as Extreme-scale Model Exploration with Swift (EMEWS) [4] and Open MOdeL Experiment (OpenMOLE) [5], have been developed

  • The “headless” nature of HPC means that people unfamiliar with command-line terminals may struggle to utilize the resources

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Summary

Introduction

Evaluating a new computational model requires testing many parameter sets and validating the results [1, 2], collectively called model exploration (ME) [3]. For complex models with many parameters to explore, computational time can be high and managing the testing pipeline, processing the results, and storing the data can quickly become cumbersome. We created DAPT to allow easy integration of low-cost (or free) cloud services (e.g. Google Sheets and Box) into ME pipelines and enable all members of a team to pool their computing resources to run simulations, rather than just one person.

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