Abstract

We took a discovery approach to explore the actions of cAMP and two of its analogs, one a cAMP mimic ((S(p))-adenosine cyclic 3':5'-monophosphorothioate ((S(p))-cAMPS)) and the other a diastereoisomeric antagonist ((R(p))-cAMPS), on a model system of the type Iα cyclic AMP-dependent protein kinase holoenzyme, RIα(91-244)·C-subunit, by using fluorescence spectroscopy and amide H/(2)H exchange mass spectrometry. Specifically, for the fluorescence experiments, fluorescein maleimide was conjugated to three cysteine single residue substitution mutants, R92C, T104C, and R239C, of RIα(91-244), and the effects of cAMP, (S(p))-cAMPS, and (R(p))-cAMPS on the kinetics of R-C binding and the time-resolved anisotropy of the reporter group at each conjugation site were measured. For the amide exchange experiments, ESI-TOF mass spectrometry with pepsin proteolytic fragmentation was used to assess the effects of (R(p))-cAMPS on amide exchange of the RIα(91-244)·C-subunit complex. We found that cAMP and its mimic perturbed at least parts of the C-subunit interaction Sites 2 and 3 but probably not Site 1 via reduced interactions of the linker region and αC of RIα(91-244). Surprisingly, (R(p))-cAMPS not only increased the affinity of RIα(91-244) toward the C-subunit by 5-fold but also produced long range effects that propagated through both the C- and R-subunits to produce limited unfolding and/or enhanced conformational flexibility. This combination of effects is consistent with (R(p))-cAMPS acting by enhancing the internal entropy of the R·C complex. Finally, the (R(p))-cAMPS-induced increase in affinity of RIα(91-244) toward the C-subunit indicates that (R(p))-cAMPS is better described as an inverse agonist because it decreases the fractional dissociation of the cyclic AMP-dependent protein kinase holoenzyme and in turn its basal activity.

Highlights

  • We took a discovery approach to explore the actions of cAMP and two of its analogs, one a cAMP mimic ((Sp)adenosine cyclic 3؅:5؅-monophosphorothioate ((Sp)cAMPS)) and the other a diastereoisomeric antagonist ((Rp)-cAMPS), on a model system of the type I␣ cyclic AMP-dependent protein kinase holoenzyme, RI␣(91– 244)1⁄7C-subunit, by using fluorescence spectroscopy and amide H/2H exchange mass spectrometry

  • The other approach involves an examination of the effects of cAMP and its analogs on solvent exposure/conformational flexibility of RI␣(91–244)1⁄7C-subunit complex using H/2H amide exchange measured with a combination of mass spectrometry (ESI-QTOF) and proteolytic fragmentation

  • Because fluorescein maleimide (FM)-R92C conjugate binding to C-subunit is associated with a relatively large and unambiguous change in fluorescence (ϳ40% decrease) compared with the other conjugated mutants (9), the FM-R92C conjugate was utilized to assess the effects of cAMP and two phosphorothioate analogs on the kinetics of C-subunit binding

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Summary

EXPERIMENTAL PROCEDURES

Materials—ATP, cAMP, and MOPS were obtained from Sigma-Aldrich. (Sp)-cAMPS and (Rp)-cAMPS triethylamine were obtained from Biolog (Bremen, Germany). Amide Hydrogen-Deuterium Exchange ESI-Q-TOF Mass Spectrometry—The C1⁄7RI␣(91–244) R92C protein complexes (109 ␮M) in the absence and presence of 1 mM (Rp)-cAMPS were allowed to exchange with deuterated buffer solutions by 10-fold dilutions of protein samples in deuterated 50 mM MOPS, 50 mM NaCl, 2 mM MgCl2, 0.2 mM ATP, 1 mM DTT, pHread ϭ 7.0 (deuterated buffer B). The reaction samples were analyzed on a Waters Synapt high definition mass spectrometry (HDMS) system (Waters) Both the pepsin cartridge and C18 column were housed in a refrigerated module at 2 °C to minimize deuterium back-exchange during analysis (15, 16). The region in RI␣(91–244) spanning residues 111–130 is a highly solvent-exchangeable region (10), and all five overlapping peptides used for calculations of back-exchange span this region and showed nearly complete exchange in ligand-free RI␣(91–244) following 10-min deuterium exchange and would represent fully deuterated samples following 24-h exchange. All deuterium exchange values reported were corrected for a 32.7% back-exchange by multiplying the raw centroid values by a multiplication factor of 1.49

RESULTS
Mutant state
Number of exchangeable amides
DISCUSSION
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