Abstract

AbstractIn computational biology there is a strong need to exchange quantitative models of biological processes in a standardized way. For storing and retrieving peer-reviewed models the BioModels Database has been available for several years. But at the moment there is no tool available to bring a model from development in the lab directly to the peer-reviewed online resource.The JUMMP (JUst a Model Management Platform) project aims at providing a generic model management platform for any standardized model file. Through a well-elaborated security layer models can be developed and shared privately and later on be made available to the curation process and the broader community. Each change to a model is recorded in a version control system allowing to easily track changes during the development.In this presentation the current state of development of the JUMMP project is discussed as well as the future steps which are needed to get JUMMP into a shape so that it can be used as the infrastructure for the BioModels Database.

Highlights

  • Who develops it Computational Systems Neurobiology Group at EBI Data Management Group of TBI at DKFZ Community: JUMMP is Open Source

  • Implemented Features Import of MIRIAM registry dump Generates identifiers.org URLs Web Services for name resolving Annotations are resolved during SBML upload Stored in database Search Models by Gene-Ontology Tree

  • Implemented Features Publication Information Support Retrieved from Webservice Automatically extracted from SBML file Stored in Database Manual insert possible

Read more

Summary

Introduction

Who develops it Computational Systems Neurobiology Group at EBI Data Management Group of TBI at DKFZ Community: JUMMP is Open Source. Agenda Introduction Current State of Development Development Martin Graßlin 07.09.2011 e Precedings : doi:10.1038/npre.2011.6371.1 : Posted 8 Sep

Results
Conclusion

Talk to us

Join us for a 30 min session where you can share your feedback and ask us any queries you have

Schedule a call

Disclaimer: All third-party content on this website/platform is and will remain the property of their respective owners and is provided on "as is" basis without any warranties, express or implied. Use of third-party content does not indicate any affiliation, sponsorship with or endorsement by them. Any references to third-party content is to identify the corresponding services and shall be considered fair use under The CopyrightLaw.