Abstract

Aptamers are synthetic single-stranded DNA or RNA sequences selected from combinatorial oligonucleotide libraries through the well-known in vitro selection and iteration process, SELEX. The last three decades have witnessed a sudden boom in aptamer research, owing to their unique characteristics, like high specificity and binding affinity, low immunogenicity and toxicity, and ease in synthesis with negligible batch-to-batch variation. Aptamers can specifically bind to the targets ranging from small molecules to complex structures, making them suitable for a myriad of diagnostic and therapeutic applications. In analytical scenarios, aptamers are used as molecular probes instead of antibodies. They have the potential in the detection of biomarkers, microorganisms, viral agents, environmental pollutants, or pathogens. For therapeutic purposes, aptamers can be further engineered with chemical stabilization and modification techniques, thus expanding their serum half-life and shelf life. A vast number of antagonistic aptamers or aptamer-based conjugates have been discovered so far through the in vitro selection procedure. However, the aptamers face several challenges for its successful clinical translation, and only particular aptamers have reached the marketplace so far. Aptamer research is still in a growing stage, and a deeper understanding of nucleic acid chemistry, target interaction, tissue distribution, and pharmacokinetics is required. In this review, we discussed aptamers in the current diagnostics and theranostics applications, while addressing the challenges associated with them. The report also sheds light on the implementation of aptamer conjugates for diagnostic purposes and, finally, the therapeutic aptamers under clinical investigation, challenges therein, and their future directions.

Highlights

  • Aptamers are a class of small single-stranded DNA or RNA oligonucleotides, with a three-dimensional structure enabling the target binding and specificity

  • The aptamers had more affinity with target bacteria, as compared to complementary DNA (cDNA), forming a 3D structure that led to the dissociation of up-conversion nanoparticles (UCNPs)-cDNA from aptamer nucleotide-gold nanoparticle (AuNP)-aptamers conjugate; this resulted in the recovery of up-conversion based fluorescence

  • Emphasis should be given to the recognition of small molecule targets or targets that are toxic to the cell

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Summary

Introduction

Aptamers are a class of small single-stranded DNA or RNA oligonucleotides, with a three-dimensional structure enabling the target binding and specificity. The strategy involves the iterative selection of high-affinity nucleic acid ligands towards a broad range of targets, including small molecules, proteins, peptides, toxins, whole cells, and tissues. The next-generation sequencing platforms, computational simulations, and high-throughput screening methods were integrated into the SELEX procedures to make the technique more dynamic and user friendly These technologies provided significant insights during selection procedures, easing up the scale-up operations, and delivering highly efficient aptamers at a low cost. SomaLogic Inc. developed Slow Off -rate modified aptamer (SOMAmers), which contains modified nucleic acid bases such as 5-(N-benzyl carboxamide)-2-deoxyuridine (Bn-dU) or 5-[N-(1-naphthylmethyl) carboxamide]-2-deoxyuridine (Nap-dU) These modified bases commonly used to select aptamers against small molecules and challenging protein targets, such as toxins. Considering the challenges, the novel modification strategies that are coming up and the need to draw them together for a better understanding of aptamer technology, we summarized the most recent developments in aptamer as diagnostic and therapeutic purposes, throwing light on biomarker discovery and clinical evaluation of aptamers that are already developed and marketed, and those in the pipeline

Aptamers in Cancer Diagnosis
SELEX Method
Aptamers in Infectious Disease Diagnosis
Aptamers as Therapeutic Agents
Challenges
Findings
Conclusions
Full Text
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