Cu, Zn Superoxide dismutase: distorted active site binds substrate without significant energetic cost

Abstract

Copper, Zinc superoxide dismutase (CuZnSOD) catalyzes the dismutation of the toxic superoxide radical into molecular oxygen and hydrogen peroxide. Dismutation is achieved by reduction and re-oxidation of the active site copper ion, where the superoxide substrate binds. This enzyme is considered to be a perfect enzyme, as the catalytic rate is very high and diffusion controlled. The redox active copper ion is coordinated by four histidine residues in a distorted square planar geometry. Much has been written about the biological significance of the geometry distortion. It is sometimes considered that it should help to tune the redox potential of the copper ion in order to efficiently reduce the first superoxide molecule and oxidize the second one. In this work we present a series of high level theoretical calculations using realistic models, which demonstrate that the distorted geometry is fundamental for the catalytic efficiency of the enzyme by allowing substrate binding without extensive geometric reorganization of the copper complex, upon changing from four to five ligands. A lower limit for the reorganization energy is calculated here in 22 kcal/mol, which would slow down the reaction kinetics by more than 13 orders of magnitude, transforming a perfect enzyme into an inefficient one.