Abstract

Nuclear dot protein 52 kDa (NDP52, also known as CALCOCO2) functions as a selective autophagy receptor. The linear ubiquitin chain assembly complex (LUBAC) specifically generates the N-terminal Met1-linked linear ubiquitin chain, and regulates innate immune responses, such as nuclear factor-κB (NF-κB), interferon (IFN) antiviral, and apoptotic pathways. Although NDP52 and LUBAC cooperatively regulate bacterial invasion-induced xenophagy, their functional crosstalk remains enigmatic. Here we show that NDP52 suppresses canonical NF-κB signaling through the broad specificity of ubiquitin-binding at the C-terminal UBZ domain. Upon TNF-α-stimulation, NDP52 associates with LUBAC through the HOIP subunit, but does not disturb its ubiquitin ligase activity, and has a modest suppressive effect on NF-κB activation by functioning as a component of TNF-α receptor signaling complex I. NDP52 also regulates the TNF-α-induced apoptotic pathway, but not doxorubicin-induced intrinsic apoptosis. A chemical inhibitor of LUBAC (HOIPIN-8) cancelled the increased activation of the NF-κB and IFN antiviral pathways, and enhanced apoptosis in NDP52-knockout and -knockdown HeLa cells. Upon Salmonella-infection, colocalization of Salmonella, LC3, and linear ubiquitin was detected in parental HeLa cells to induce xenophagy. Treatment with HOIPIN-8 disturbed the colocalization and facilitated Salmonella expansion. In contrast, HOIPIN-8 showed little effect on the colocalization of LC3 and Salmonella in NDP52-knockout cells, suggesting that NDP52 is a weak regulator in LUBAC-mediated xenophagy. These results indicate that the crosstalk between NDP52 and LUBAC regulates innate immune responses, apoptosis, and xenophagy.

Highlights

  • Protein ubiquitination, a crucial post-translational modification, is catalyzed by ubiquitin-activating enzyme (E1), ubiquitin-conjugating enzyme (E2), and ubiquitin ligase (E3), and regulates numerous cellular functions, including proteasomal degradation, membrane trafficking, DNA repair, and signal transduction, by generating various types of ubiquitin linkages in the “ubiquitin code” [1, 2]

  • Human NDP52 consists of the SKIP carboxyl homology (SKICH), LC3-interacting region (LIR), coiled-coil, galectin-8 binding (GALBI), and C-terminal ubiquitin-binding zinc finger (UBZ) domains [17, 19] (Figure 1A)

  • The results revealed that MBPNDP52-wild type (WT), but not the D439R mutant, coprecipitated long (>130 kDa) linear polyubiquitin chains

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Summary

Introduction

A crucial post-translational modification, is catalyzed by ubiquitin-activating enzyme (E1), ubiquitin-conjugating enzyme (E2), and ubiquitin ligase (E3), and regulates numerous cellular functions, including proteasomal degradation, membrane trafficking, DNA repair, and signal transduction, by generating various types of ubiquitin linkages in the “ubiquitin code” [1, 2]. Dysfunctions in LUBAC and linear ubiquitin-binding proteins, such as NF-kB-essential modulator (NEMO), optineurin (OPTN), and A20, are associated with various disorders [6,7,8,9,10]. We previously reported that OPTN selectively binds to linear ubiquitin through the UBAN domain, and plays a crucial role in the suppression of NF-kB activity [8]. The amyotrophic lateral sclerosisassociated OPTN mutations, such as E478G and Q398X, abrogated the inhibitory effects on LUBAC-mediated NF-kB activation, and increased caspase activation [7, 8]. These results suggested that LUBAC affects the physiological functions of OPTN

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