Abstract
The human genome project revealed the existence of many thousands of long non-coding RNAs (lncRNAs). These transcripts that are over 200 nucleotides long were soon recognized for their importance in regulating gene expression. However, their poor conservation among species and their still controversial annotation has limited their study to some extent. Moreover, a generally lower expression of lncRNAs as compared to protein coding genes and their enigmatic biochemical mechanisms have impeded progress in the understanding of their biological roles. It is, however, known that lncRNAs engage in various kinds of interactions and can form complexes with other RNAs, with genomic DNA or proteins rendering their functional regulatory network quite complex. It has emerged from recent studies that lncRNAs exert important roles in gene expression that affect many cellular processes underlying development, cellular differentiation, but also the pathogenesis of blood cancers like leukemia and lymphoma. A number of lncRNAs have been found to be regulated by several well-known transcription factors including Myelocytomatosis viral oncogene homolog (MYC). The c-MYC gene is known to be one of the most frequently deregulated oncogenes and a driver for many human cancers. The c-MYC gene is very frequently activated by chromosomal translocations in hematopoietic cancers most prominently in B- or T-cell lymphoma or leukemia and much is already known about its role as a DNA binding transcriptional regulator. Although the understanding of MYC’s regulatory role controlling lncRNA expression and how MYC itself is controlled by lncRNA in blood cancers is still at the beginning, an intriguing picture emerges indicating that c-MYC may execute part of its oncogenic function through lncRNAs. Several studies have identified lncRNAs regulating c-MYC expression and c-MYC regulated lncRNAs in different blood cancers and have unveiled new mechanisms how these RNA molecules act. In this review, we give an overview of lncRNAs that have been recognized as critical in the context of activated c-MYC in leukemia and lymphoma, describe their mechanism of action and their effect on transcriptional reprogramming in cancer cells. Finally, we discuss possible ways how an interference with their molecular function could be exploited for new cancer therapies.
Highlights
The knowledge gained by exploring the human genome is expanding every day thanks to high-throughput RNA sequencing (RNA-Seq) and other generation sequencing technologies
The relationship between the proto-oncoprotein Myelocytomatosis viral oncogene homolog (MYC), the MYC gene and long non-coding RNAs (lncRNAs) is of high complexity since they form an interactive network in which all molecules involved can be regulators or targets connected by linear dependencies and feed-back or feed-forward loops
This network between MYC and lncRNAs clearly plays a crucial role in the regulation of gene expression in different hematological malignancies and a number of ongoing studies will reveal additional lncRNAs that regulate or are controlled by MYC
Summary
The knowledge gained by exploring the human genome is expanding every day thanks to high-throughput RNA sequencing (RNA-Seq) and other generation sequencing technologies. LncRNAs show interactions with chromatin modifiers such as the BRG1/BAF or the SWI/SNF complexes [reviewed in [15]] or act as modulators of protein activity or as enzyme cofactors [reviewed in [16]] They function as super enhancer RNAs (eRNAs) affecting multiple genes in trans [17] or by competing with miRNAs for binding to their targets (competing endogenous RNAs or ceRNAs) [18]. Given the importance of MYC for human cancers, we discuss the implications that these interactions have for new therapeutic strategies against human blood cancers Kluiver and his group [72] used the immortalized B cell line P493-6, which was engineered to express MYC in a tetracyclinerepressible manner, and primary B-cell lymphoma samples from patients to show that lncRNAs are a main component of the TABLE 1 | Summary of lncRNAs and their crosstalk with MYC involved in different hematological malignancies
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