Abstract

Several metabolic enzymes assemble into distinct intracellular structures in prokaryotes and eukaryotes suggesting an important functional role in cell physiology. The CTP-generating enzyme CTP synthase forms long filamentous structures termed cytoophidia in bacteria, yeast, fruit flies and human cells independent of its catalytic activity. However, the amino acid determinants for protein-protein interaction necessary for polymerisation remained unknown. In this study, we systematically analysed the role of the conserved N-terminal of Drosophila CTP synthase in cytoophidium assembly. Our mutational analyses identified three key amino acid residues within this region that play an instructive role in organisation of CTP synthase into a filamentous structure. Co-transfection assays demonstrated formation of heteromeric CTP synthase filaments which is disrupted by protein carrying a mutated N-terminal alanine residue thus revealing a dominant-negative activity. Interestingly, the dominant-negative activity is supressed by the CTP synthase inhibitor DON. Furthermore, we found that the amino acids at the corresponding position in the human protein exhibit similar properties suggesting conservation of their function through evolution. Our data suggest that cytoophidium assembly is a multi-step process involving N-terminal-dependent sequential interactions between correctly folded structural units and provide insights into the assembly of these enigmatic structures.

Highlights

  • Intracellular compartmentation of biological processes allows a higher level of complexity in eukaryotic cells

  • The gene model for Drosophila CTP synthase proteins from Drosophila (CTPsyn) shows three transcripts associated with the locus

  • CTPsynB is identical to CTPsyn except at the N-terminal end - the first 52 amino acid residues of CTPsynB protein differ considerably from the corresponding 56 amino acids of CTPsyn (Fig. S1A)

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Summary

Introduction

Intracellular compartmentation of biological processes allows a higher level of complexity in eukaryotic cells. In addition to the canonical membrane-bound organelles, several membrane-less macromolecular assemblies consisting of RNA and proteins have been discovered [1,2,3,4]. Such structures are dynamic and responsive to both intrinsic and extrinsic cues suggesting a functional role in cellular response and adaptation. Several metabolic enzymes selfassemble into structurally diverse higher order structures in the cytoplasm [5,6,7,8] indicating an important role in metabolic programming. The underlying principles that govern the formation, maintenance and regulation of these structures remain poorly understood

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