Abstract

The genetic modifications through breeding of crop plants have long been used to improve the yield and quality. However, precise genome editing (GE) could be a very useful supplementary tool for improvement of crop plants by targeted genome modifications. Various GE techniques including ZFNs (zinc finger nucleases), TALENs (transcription activator-like effector nucleases), and most recently clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 (CRISPR-associated protein 9)-based approaches have been successfully employed for various crop plants including fruit trees. CRISPR/Cas9-based approaches hold great potential in GE due to their simplicity, competency, and versatility over other GE techniques. However, to the best of our knowledge no such genetic improvement has ever been developed in date palm—an important fruit crop in Oasis agriculture. The applications of CRISPR/Cas9 can be a challenging task in date palm GE due to its large and complex genome, high rate of heterozygosity and outcrossing, in vitro regeneration and screening of mutants, high frequency of single-nucleotide polymorphism in the genome and ultimately genetic instability. In this review, we addressed the potential application of CRISPR/Cas9-based approaches in date palm GE to improve the sustainable date palm production. The availability of the date palm whole genome sequence has made it feasible to use CRISPR/Cas9 GE approach for genetic improvement in this species. Moreover, the future prospects of GE application in date palm are also addressed in this review.

Highlights

  • The erosion of plant genetic resources and the global climate changes confront us with enormous challenges including biotic and abiotic stresses (Arzani and Ashraf, 2016)

  • In zinc finger nucleases (ZFNs) and transcription activator-like effector nucleases (TALENs) sequence specificity is conferred by DNA-binding domain of protein while in clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9) system single-guide RNA (sgRNA) mediate this, no protein engineering is involved in CRISPR system

  • Whereas, multiplexing in CRISPR/Cas9 system requires only multiple sgRNAs jointly expressed with the Cas9

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Summary

INTRODUCTION

The erosion of plant genetic resources and the global climate changes confront us with enormous challenges including biotic and abiotic stresses (Arzani and Ashraf, 2016). Applications of CRISPR/Cas in Date Palm editing (GE) tools like zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs), and the contemporary clustered regularly interspaced short palindromic repeats (CRISPR) along with CRISPR-associated protein 9 (Cas9) have established their hierarchy in editing plant genomes. Several biotic and abiotic stresses further worsen the situation Biotechnological approaches, such as plant tissue culture, marker-assisted breeding and DNA finger printing, have been used in date palm genomics but failed to bring a significant improvement. For the sustainability of date palm, employment of new techniques in date palm breeding programs is highly needed to develop tolerant varieties and enrich the existing germplasm This can be achieved by modifying the date palm genome against various biotic and abiotic stresses by overexpressing or downregulating the key genes involved in biochemical pathways, or by engineering resistance against various pests and diseases. The date palm insect/pests can be targeted by CRISPR/Cas9-based approaches through “gene drives” to circumvent their population (Figure 1)

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