Abstract
ABSTRACTThe SARS-CoV-2 B.1.1.7 variant has increased sharply in numbers worldwide and is reported to be more contagious than the nonvariant. Little is known regarding the detailed clinical features of B.1.1.7 variant infection. Data on 74 COVID-19 cases from two outbreaks in two districts of Beijing, China were extracted from a cloud database, including 41 cases from Shunyi District (Shunyi B.1.470 group) and 33 from Daxing (Daxing B.1.1.7 group) from December 25, 2020 to January 17, 2021. We conducted a comparison of the clinical characteristics. Seven clinical indicators of the Daxing B.1.1.7 group were significantly higher than those of the Shunyi group, including the proportion with fever over 38°C, the levels of C-reactive protein (CRP), serum amyloid A (SAA), creatine kinase (CK), d-dimer (DD), and CD4+ T lymphocytes (CD4+ T), and the proportion with ground-glass opacity (GGO) in the lung (P values of ≤0.05). After adjusting for age, B.1.1.7 variant infection was a risk factor for elevated CRP (P = 0·045), SAA (P = 0·011), CK (P = 0·034), and CD4+ T (P = 0.029) and for the presence of GGO (P = 0.005). The median threshold cycle (CT) value of reverse transcriptase quantitative PCR (RT-qPCR) tests of the N gene target in the Daxing B.1.1.7 group was significantly lower (P = 0.036) than that in the Shunyi B.1.470 group. Clinical features, including a more serious inflammatory response, pneumonia, and a possibly higher viral load, were detected in the cases infected with B.1.1.7 SARS-CoV-2. The B.1.1.7 variant may have increased pathogenicity.IMPORTANCE The SARS-CoV-2 B.1.1.7 variant, which was first identified in the United Kingdom, has increased sharply in numbers worldwide and was reported to be more contagious than the nonvariant. To our knowledge, no studies investigating the detailed clinical features of COVID-19 cases infected with the B.1.1.7 variant have been published. Local epidemics have rarely occurred in China, but occasionally, a small clustered outbreak triggered by an imported SARS-CoV-2 strain with only one chain of transmission could happen. From late 2020 to early 2021, two clustered COVID-19 outbreaks occurred in Beijing, one of which was caused by the B.1.1.7 variant. The COVID-19 patients from the two outbreaks received similar clinical tests, diagnoses, and treatments. We found that the B.1.1.7 variant infection could lead to a more serious inflammatory response, acute response process, more severe pneumonia, and probably higher viral loads. This therefore implies that the B.1.1.7 variant may have increased pathogenicity.
Highlights
The SARS-CoV-2 B.1.1.7 variant has increased sharply in numbers worldwide and is reported to be more contagious than the nonvariant
This study aimed to compare the clinical presentations, reverse transcriptase quantitative PCR (RT-qPCR) results, and whole-genomic features of cases from the Daxing B.1.1.7 group and Shunyi B.1.470 group to evaluate the COVID-19 severity of cases infected by the B.1.1.7 variant
After adjusting for age, we found that the group factor (B.1.1.7 variant infection or nonvariant infection) was the main risk factor for higher C-reactive protein (CRP), higher serum amyloid A (SAA) (OR = 5.03, P = 0.011), higher creatine kinase (CK) (OR = 0.22, P = 0.034), groundglass opacity (GGO) (OR = 5.42, P = 0.005), and higher CD41 T lymphocytes (CD41 T) (OR = 3.31, P = 0.029)
Summary
The SARS-CoV-2 B.1.1.7 variant has increased sharply in numbers worldwide and is reported to be more contagious than the nonvariant. Confirmed by whole-genome sequencing and lineage typing results [9, 10], this outbreak was caused by SARS-CoV-2 B.1.1.7 This was the first local transmission of B.1.1.7 in China, which constituted a new challenge to the prevention and control of COVID-19 in China. Three weeks prior to the Daxing outbreak, another local COVID-19 outbreak occurred in Shunyi District, Beijing, caused by the lineage B.1.470 [9, 10], which was detected mostly in Asian countries Both outbreaks were well controlled within a month. This study aimed to compare the clinical presentations, reverse transcriptase quantitative PCR (RT-qPCR) results, and whole-genomic features of cases from the Daxing B.1.1.7 group and Shunyi B.1.470 group to evaluate the COVID-19 severity of cases infected by the B.1.1.7 variant
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