Abstract

BackgroundNatural transformation enables acquisition of adaptive traits and drives genome evolution in prokaryotes. Yet, the selective forces responsible for the evolution and maintenance of natural transformation remain elusive since taken-up DNA has also been hypothesized to provide benefits such as nutrients or templates for DNA repair to individual cells.ResultsWe investigated the immediate effects of DNA uptake and recombination on the naturally competent bacterium Acinetobacter baylyi in both benign and genotoxic conditions. In head-to-head competition experiments between DNA uptake-proficient and -deficient strains, we observed a fitness benefit of DNA uptake independent of UV stress. This benefit was found with both homologous and heterologous DNA and was independent of recombination. Recombination with taken-up DNA reduced survival of transformed cells with increasing levels of UV-stress through interference with nucleotide excision repair, suggesting that DNA strand breaks occur during recombination attempts with taken-up DNA. Consistent with this, we show that absence of RecBCD and RecFOR recombinational DNA repair pathways strongly decrease natural transformation.ConclusionsOur data show a physiological benefit of DNA uptake unrelated to recombination. In contrast, recombination during transformation is a strand break inducing process that represents a previously unrecognized cost of natural transformation.

Highlights

  • Natural transformation enables acquisition of adaptive traits and drives genome evolution in prokaryotes

  • We further show that genomic integration of homologous DNA both reduced transformant fitness when exposed to UV-induced stress, and under benign conditions strongly depended on the RecBCD and RecFOR DNA strand break repair pathways

  • Uptake of exogenous DNA is beneficial regardless of sequence homology, DNA damage and recombination We investigated the general fitness effects of DNA uptake in mixed culture competition experiments with the transformation-proficient A. baylyi wildtype strain (LCQ2) and its non-transformable ΔcomB-F derivative (Additional file 1: Table S1)

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Summary

Introduction

Natural transformation enables acquisition of adaptive traits and drives genome evolution in prokaryotes. Experimental evolution approaches using various bacterial species competent for natural transformation including Helicobacter pylori, Acinetobacter baylyi and Streptococcus pneumoniae have revealed that the impact of natural transformation on rates of adaptive evolution can be beneficial [18, 19], neutral [20], and/or context dependent [21, 22]. Taken together, these reports suggest that the widely accepted idea that natural transformation accelerates bacterial adaptation lacks generality

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