Abstract

For almost a century, since Bernal\'s attempts at a molecular theory of liquid structure(Bernal [1]), correlation functions have been the bridge to compare theoretical calculations with experimental measurements in the study of disordered materials. Pair Distribution Functions (g(r)), Radial Distribution Functions (J(r)), Plane Angle Distributions (g({\theta})) and Coordination Numbers (nc) have been widely used to characterize amorphous and liquid materials (Waseda [2]; Elliott [3]; Valladares et al. [4]) and, in particular Bulk Metallic Glasses (Miller and Liaw [5]; Galv\'an-Col\'in et al. [6]). Correlation is an Open-Source software designed to analyze liquid structures and amorphous solids; the software is user-friendly, the modular design makes it easy to integrate in High-Throughput Computing (HTC) to process structures with a large number of constituents in a standardized fashion. Correlation is ready to be used in Windows,Linux and Mac. Currently, we support DMol3 (CAR), CASTEP (CELL), ONETEP (DAT)and VASP (POSCAR) structure files. The code can handle up to 25,000 atoms, so it can be used to analyze both classical and first-principles simulations. At the end, the output of every single correlation function is exported to the corresponding comma-separated value file (CSV), to further analyze the results.

Highlights

  • Correlation is an Open-Source software designed to analyze liquid structures and amorphous solids; the software is user-friendly, the modular design makes it easy to integrate in High-Throughput Computing (HTC) to process structures with a large number of constituents in a standardized fashion

  • RadialDistributionFunction : Computes the Radial Distribution Function (RDF) of a group of positions in a file, averages it for all snapshots in the file, atom positions must be in a custom format. The use of these tools has been limited, either by a prohibiting cost (Forcite Plus), or has been restricted to private academic groups, or geopolitical limitations introduced by the licensing (CASTEP postprocessing tools), or by being specially designed to specific software for material simulation (PTRAJ/CPPTRAJ, VASPKIT), or by having a narrow scope of input formats and correlation functions calculated

  • The Fourier transform of the scattering intensity given by the structure factor S(Q), yields the pair distribution function (PDF) g(r) defined by:

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Summary

Summary

Since Bernal’s attempts at a molecular theory of liquid structure (Bernal, 1937), correlation functions have been the bridge to compare theoretical calculations with experimental measurements in the study of disordered materials. Correlation is an Open-Source software designed to analyze liquid structures and amorphous solids; the software is user-friendly, the modular design makes it easy to integrate in High-Throughput Computing (HTC) to process structures with a large number of constituents in a standardized fashion. Correlation is ready to be used in Windows, Linux and Mac. Currently, we support DMol (CAR), CASTEP (CELL), ONETEP (DAT) and VASP (POSCAR) structure files. The output of every single correlation function is exported to the corresponding comma-separated value file (CSV), to further analyze the results

Statement of Need
Pair Distribution Functions
Plane Angle Distribution
Conclusion & Perspective
Full Text
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