Abstract

The number of all possible epidemics of a given infectious disease that could occur on a given landscape is large for systems of real-world complexity. Furthermore, there is no guarantee that the control actions that are optimal, on average, over all possible epidemics are also best for each possible epidemic. Reinforcement learning (RL) and Monte Carlo control have been used to develop machine-readable context-dependent solutions for complex problems with many possible realizations ranging from video-games to the game of Go. RL could be a valuable tool to generate context-dependent policies for outbreak response, though translating the resulting policies into simple rules that can be read and interpreted by human decision-makers remains a challenge. Here we illustrate the application of RL to the development of context-dependent outbreak response policies to minimize outbreaks of foot-and-mouth disease. We show that control based on the resulting context-dependent policies, which adapt interventions to the specific outbreak, result in smaller outbreaks than static policies. We further illustrate two approaches for translating the complex machine-readable policies into simple heuristics that can be evaluated by human decision-makers.This article is part of the theme issue ‘Modelling infectious disease outbreaks in humans, animals and plants: epidemic forecasting and control’. This theme issue is linked with the earlier issue ‘Modelling infectious disease outbreaks in humans, animals and plants: approaches and important themes’.

Highlights

  • Computational models of disease spread and control have been widely used in preparedness planning for outbreaks of infectious disease to both forecast outbreak severity [1,2,3,4] and decide among competing control interventions [5,6,7,8,9,10]

  • We chose the number of IPs as a state variable because (a) it is correlated with time until the first detection, which has been cited elsewhere as important for predicting the severity of outbreaks [38]; (b) it changes throughout the course of an outbreak; and (c) ring culling and ring vaccination strategies take place in areas surrounding IPs so the application and outcome of these actions will vary according to the number of infected premises

  • Because we summarized the state space for this case study in two dimensions, using the spatial extent of the outbreak and the number of farms infected, we can plot a map of the resulting Reinforcement learning (RL) policy, indicating the best action to take for each position in the summary state space

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Summary

Introduction

Computational models of disease spread and control have been widely used in preparedness planning for outbreaks of infectious disease to both forecast outbreak severity [1,2,3,4] and decide among competing control interventions [5,6,7,8,9,10]. We present two case studies that use RL and MC control to develop state-dependent response policies in the context of a livestock outbreak, based on the dynamics of the 2001 footand-mouth disease (FMD) outbreak in the UK. We chose the number of IPs as a state variable because (a) it is correlated with time until the first detection, which has been cited elsewhere as important for predicting the severity of outbreaks [38]; (b) it changes throughout the course of an outbreak; and (c) ring culling and ring vaccination strategies take place in areas surrounding IPs so the application and outcome of these actions will vary according to the number of infected premises. The RL code for case study 2 is available at the following repository: https://github.com/p-robot/context_matters

Results
DQN policy
Findings
Discussion
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