Abstract
Questions about the changes of biological systems in response to hostile environmental factors are important but not easy to answer. Often, the traditional description with differential equations is difficult due to the overwhelming complexity of the living systems. Another way to describe complex systems is by simulating them with phenomenological models such as the well-known evolutionary agent-based model (EABM). Here we developed an EABM to simulate cell colonies as a multi-agent system that adapts to hyper-gravity in starvation conditions. In the model, the cell's heritable characteristics are generated and transferred randomly to offspring cells. After a qualitative validation of the model at normal gravity, we simulate cellular growth in hyper-gravity conditions. The obtained data are consistent with previously confirmed theoretical and experimental findings for bacterial behavior in environmental changes, including the experimental data from the microgravity Atlantis and the Hypergravity 3000 experiments. Our results demonstrate that it is possible to utilize an EABM with realistic qualitative description to examine the effects of hypergravity and starvation on complex cellular entities.
Highlights
Artificial selections have been used often to create organisms with favorable heritable traits
Many evolutionary experiments have been applied to microorganisms such as Escherichia coli
Some of these experiments examine the genetic changes in multiple populations of bacteria stemming from a common ancestor that was propagated for thousands of generations [1,2]
Summary
Artificial selections have been used often to create organisms with favorable heritable traits. Many evolutionary experiments have been applied to microorganisms such as Escherichia coli. Some of these experiments examine the genetic changes in multiple populations of bacteria stemming from a common ancestor that was propagated for thousands of generations [1,2]. Our study utilizes an evolutionary agent based model (EABM) to simulate the effects of hypergravity on specific cellular cultures undergoing starvation. Agent based modeling has been widely used to describe economical, social, and biological systems as well to study their overall behavior [4,5,6,7,8,9,10,11,12]. In addition to all the rules guiding the agent its characteristics are stochastically heritable, enabling the future cells’ generations to evolve during the simulation In our model each cell is represented as an evolutionary agent, viz. in addition to all the rules guiding the agent its characteristics are stochastically heritable, enabling the future cells’ generations to evolve during the simulation
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