Abstract

Interactions between aspartic acid (Asp) and cytidine-5-monophosphate (CMP) in metal-free systems as well as the coordination of Cu(II) ions with the above ligands were studied. The composition and overall stability constants of the species formed in those systems were determined by the potentiometric method, and the interaction centres in the ligands were identified by the spectral methods UV-Vis, EPR, NMR, and IR. In metal-free systems, the formation of adducts, in which each ligand has both positive and negative reaction centres, was established. The main reaction centres in Asp are the oxygen atoms of carboxyl groups and the nitrogen atom of the amine group, while the main reaction centre in CMP at low pH is the N(3) atom. With increasing pH, the efficiency of the phosphate group of the nucleotide in the interactions significantly increases, and the efficiency of carboxyl groups in Asp decreases. The noncovalent reaction centres in the ligands are simultaneously the potential sites of metal-ion coordination. The mode of coordination in the complexes formed in the ternary systems was established. The sites of coordination depend clearly on the solution pH. In the molecular complexes ML⋯L, metallation involves the oxygen atoms of the carboxyl groups of the amino acid, while the protonated nucleotide is in the outer coordination sphere and interacts noncovalently with the anchoring CuHx(Asp) species. The influence of the metal ions on the weak interactions between the biomolecules was established.

Highlights

  • Interactions between metal ions and nucleic acids or their fragments affect the character of many biological processes including that of genetic information transfer [1,2,3,4,5,6]

  • In the systems of polyamine/nucleotide studied earlier at our laboratory, noncovalent interactions were observed in the pH ranges in which one ligand was deprotonated and the other was protonated, and the molecular complex formation was a result of an ionion or ion-dipole reaction [26, 32,33,34,35]

  • In the systems amino acid/nucleotide, the pH ranges of protonation of both ligands overlap and each ligand has both positive and negative reaction centres

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Summary

INTRODUCTION

Interactions between metal ions and nucleic acids or their fragments affect the character of many biological processes including that of genetic information transfer [1,2,3,4,5,6]. The effective centres of coordination with metal ions are the donor nitrogen atoms N(3) from pyrimidine bases and the oxygen atoms from the phosphate groups of the nucleotide These centres are the sites of noncovalent interactions with the other bioligands present in living organisms, such as small organic polycations, polyamines, or amino acids [7, 8]. Aspartic acid takes part in thermogenic processes induced by prostaglandin E1 (PGE1) [15] and is a component of the active centres of some enzymes It influences the solubility and ionic character of proteins, protects the liver against the toxic effect of drugs, participates in the generation of ribonucleotides thereby enhancing the effectiveness of the immunological system of the organism, and prevents the destruction of neurons and the brain. This paper presents the results of a study on the coordination of Cu(II) ions with aspartic acid and cytidine-5 -monophosphate (CMP) and the interactions of these bioligands in metal-free systems

EXPERIMENTAL
RESULTS AND DISCUSSION
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