Abstract

Livestock disease controls are often linked to movements between farms, for example, via quarantine and pre- or post-movement testing. Designing effective controls, therefore, benefits from accurate assessment of herd-to-herd transmission. Household models of human infections make use of R*, the number of groups infected by an initial infected group, which is a metapopulation level analogue of the basic reproduction number R0 that provides a better characterization of disease spread in a metapopulation. However, existing approaches to calculate R* do not account for individual movements between locations which means we lack suitable tools for livestock systems. We address this gap using next-generation matrix approaches to capture movements explicitly and introduce novel tools to calculate R* in any populations coupled by individual movements. We show that depletion of infectives in the source group, which hastens its recovery, is a phenomenon with important implications for design and efficacy of movement-based controls. Underpinning our results is the observation that R* peaks at intermediate livestock movement rates. Consequently, under movement-based controls, infection could be controlled at high movement rates but persist at intermediate rates. Thus, once control schemes are present in a livestock system, a reduction in movements can counterintuitively lead to increased disease prevalence. We illustrate our results using four important livestock diseases (bovine viral diarrhoea, bovine herpes virus, Johne's disease and Escherichia coli O157) that each persist across different movement rate ranges with the consequence that a change in livestock movements could help control one disease, but exacerbate another.

Highlights

  • Livestock diseases have an important impact on the economy and animal welfare [1,2], and can pose a zoonotic risk to humans [3,4,5]

  • Many are introduced into herds via movements of infected animals, e.g. bovine tuberculosis, brucellosis, bovine viral diarrhoea (BVD), scrapie, foot-and-mouth disease (FMD) and Johne’s disease [5,6,7,8,9,10,11]

  • We illustrate our findings for four important livestock infections—bovine herpes virus (BHV), bovine viral diarrhoea virus (BVDV), Mycobacterium avium ssp paratuberculosis and Escherichia coli O157 (E. coli O157)—showing that a reduction in movement rates could counterintuitively 2 result in an increase in disease prevalence, and that control to reduce one disease could exacerbate another

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Summary

Background

Livestock diseases have an important impact on the economy and animal welfare [1,2], and can pose a zoonotic risk to humans [3,4,5]. R0 is an individual-based rather than a groupbased metric, and a system with high R0 could have high within-group (i.e. within farm) transmission, but only low between-group (between farm) transmission [19]; R0 can be poor at describing transmission within metapopulations [20], such as the risk of disease in one farm spreading to others, e.g. via livestock movements. Patch-based models proved analytically tractable, but only considered the infected status of a patch as a whole, and assumed that the timescale of reaching a quasi-stationary state was short relative to movement dynamics [21 –23] This sort of simple model has sometimes failed to predict more complex and unintuitive disease dynamics [24]. We illustrate our findings for four important livestock infections—bovine herpes virus (BHV), bovine viral diarrhoea virus (BVDV), Mycobacterium avium ssp paratuberculosis (paraTB) and Escherichia coli O157 (E. coli O157)—showing that a reduction in movement rates could counterintuitively 2 result in an increase in disease prevalence, and that control to reduce one disease could exacerbate another

The next-generation matrix approach
Derivation of R*
Features of R*
Implications for control
Multiple disease categories
Between-herd heterogeneity
Heterogeneity in herd size N and movement rate k
Findings
Discussion
Full Text
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