Abstract
Dengue infection remains poorly characterized in Africa and little is known regarding its associated viral genetic diversity. Here, we report dengue virus type 2 (DENV-2) sequence data from 10 clinical samples, including 5 complete genome sequences of the cosmopolitan genotype, obtained from febrile adults seeking outpatient care in coastal Kenya.
Highlights
Dengue infection remains poorly characterized in Africa and little is known regarding its associated viral genetic diversity
SAMN10606308 SAMN10606311 SAMN10606313 SAMN10606312 SAMN10606316 SAMN10606309 SAMN10606310 SAMN10606315 SAMN10606314 a quality assessment of short read (QUASR) parameters, “-d – q –l 125 –m 30”; SPAdes parameters, “– careful”; QUAST parameters, “minimum contig length: 500, ambiguity: one, threshold for extensive mis-assembly size: 1000”; Bowtie2: parameters, “-q –S –local.” b Short read length ranged from 35 to 250 bases. c Contig refers to contiguous length of genomic sequence in which the order of bases is known to a high confidence level
Insertions, or premature stop codons were identified within the polyprotein-coding region
Summary
Ngoi,a Zaydah R. de Laurent,a John Gitonga,a Matthew Cotten,b My V. James Nokes,a,c Eric Delwart,d Eduard Sanders,a,e George M. Warimwea,e aKEMRI-Wellcome Trust Research Programme, Kilifi, Kenya bDepartment of Viroscience, Erasmus MC, Rotterdam, The Netherlands cSchool of Life Sciences, Zeeman Institute, University of Warwick, Coventry, United Kingdom dBlood Systems Research Institute, University of California, San Francisco, California, USA eCentre for Tropical Medicine and Global Health, University of Oxford, Oxford, United Kingdom
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