Abstract
Tomato chlorotic spot virus (TCSV) is emerging as a significant constraint to vegetable and legume crops in the Americas. The complete genome sequence of a TCSV isolate naturally infecting peanut (Arachis hypogea) in Haiti was determined in the effort to build epidemiological knowledge of the virus.
Highlights
Tomato chlorotic spot virus (TCSV) is emerging as a significant constraint to vegetable and legume crops in the Americas
2,096,585 reads were mapped to the virus genome, which formed three contigs corresponding to L-RNA, S-RNA, and M-RNA, with an average coverage of 19,730ϫ, 16,546ϫ, and 5,332ϫ, respectively
Comparative sequence analysis showed that the tripartite genome of the TCSV isolate from peanut is 99% identical at the nucleotide level to the reference TCSV isolate from the Dominican Republic (GenBank accession numbers NC_035482 to NC_035484)
Summary
Tomato chlorotic spot virus (TCSV) is emerging as a significant constraint to vegetable and legume crops in the Americas. A total of 44,742,142 quality-filtered reads with an average length of 124.8 bp were obtained. 2,096,585 reads were mapped to the virus genome, which formed three contigs corresponding to L-RNA, S-RNA, and M-RNA, with an average coverage of 19,730ϫ, 16,546ϫ, and 5,332ϫ, respectively.
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