Abstract
Simple SummaryThe goal of the study was to compare the efficiency of two commercial DNA extraction kits together with two different Polymerase Chain Reaction (PCR) protocols in the detection of Echinococcus multilocularis in the feces of naturally infected foxes. Stool samples from red foxes were collected in a highly endemic area in Poland. Sedimentation and counting technique (SCT) was used as a reference method. From 48 samples, 35 were positive in SCT. Further investigations showed that 40.0% of samples (from those with SCT positive result) after Z—DNA extraction and 45.7% after Q—DNA extraction gave positive results in nested PCR. In multiplex PCR, positive results were obtained in 54.3% of samples after Z isolation and 48.6% of samples after Q. Additionally, one sample negative in SCT gave a positive result in PCR. The number of worms detected in the intestines had no influence on the PCR results. Both of the extraction methods showed similar efficiency in DNA isolation and dealing with inhibitors; however, they showed relatively low sensitivity.(1) Background: Due to the increasing distribution of Echinococcus multilocularis infections in final hosts, epidemiological investigations are important for recognizing the spreading pattern of this parasite and also to estimate risk infection for humans. (2) Methods: Investigations were conducted with two commercial kits dedicated for DNA extraction from feces: ZR Fecal DNA Mini Prep (Zymo Research, Freiburg, Germany) and QIAamp FAST DNA Stool Mini Kit (Qiagen, Hilden, Germany) (marked as Z and Q), together with two common PCR protocols (nested PCR and multiplex PCR). The goal was to compare their efficiency in detecting the genetic material of E. multilocularis in the samples of feces. Stool samples from red foxes were collected in a highly endemic area in Poland. Sedimentation and counting technique (SCT) was used as a reference method. (3) Results: From 48 samples, 35 were positive in SCT. Further investigations showed that 40.0% of samples (from those with SCT positive result) after Z-DNA extraction and 45.7% after Q-DNA extraction gave positive results in nested PCR. In multiplex PCR, positive results were obtained in 54.3% of samples after Z isolation and 48.6% of samples after Q. Additionally, one sample that resulted in being negative in SCT gave a positive result in PCR. The number of worms detected in the intestines had no influence on PCR results. (4) Conclusions: Both of the extraction methods showed similar efficiency in DNA isolation and dealing with inhibitors; however, they showed relatively low sensitivity. This was probably caused by degradation of genetic material in the field-collected samples.
Highlights
Echinococcus multilocularis is a zoonotic cestode belonging to the Taenidae family
The aim of this study was to compare two commercial DNA extraction kits combined with two Polymerase Chain Reactions (PCRs) techniques commonly used for detection of E. multilocularis DNA. We evaluate their effectiveness and ability of dealing with inhibitors present in feces
sedimentation and counting technique (SCT) examination showed the presence of E. multilocularis tapeworms in 35 of the 48 tested samples
Summary
Echinococcus multilocularis is a zoonotic cestode belonging to the Taenidae family Circulation of this parasite occurs mostly in the sylvatic cycle, based on predator–prey relationship. Humans can become an incidental intermediate host; as a consequence, this infection leads to the development of alveolar echinococcosis disease caused by larval stage of E. multilocularis, which is one of the most dangerous parasitic zoonosis in Europe [2]. This happens through accidental ingestion of the tapeworm’s eggs shed into the environment with feces of infected final hosts.
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