Abstract
Methods Plasma from 44 chronically HIV-1 subtype C infected SA individuals in the CAPRISA 002 Acute Infection cohort were used to assess the neutralization sensitivity of 10 SA and 9 Indian Tier 2 viruses in a TZM-bl assay. Intra-subtype neutralization activity between SA and Indian viruses was determined. The envelope sequence of the Indian panel was analyzed in order to identify epitopes known to be targeted by the neutralizing antibodies in a subset of the CAPRISA plasmas.
Highlights
HIV-1 subtype C is the predominant subtype in India and South Africa (SA) responsible for explosive epidemics
SA viruses showed overall greater sensitivity compared to Indian viruses; neutralization of 50% of the SA virus panel was achieved by 15/44 (34%) of the plasmas compared to only 6/44 (14%) against the Indian panel
An analysis of the gp160 sequences suggested that genetic differences in key neutralization epitopes between SA and Indian viruses were in part responsible for differences in sensitivity
Summary
HIV-1 subtype C is the predominant subtype in India and South Africa (SA) responsible for explosive epidemics. An understanding of the neutralization sensitivity of viruses from these regions will help to define shared epitopes in the envelope protein, which may be important for inclusion in an effective subtype C-specific vaccine
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