Comparison of minidogfiler and "ASCH" STR multiplex systems for preliminary estimation of variability within wolf´s like dog breeds

Abstract

This study was undertaken to estimate basic population parameters and compare resolution capabilities of two chosen STR panels (Mini-DogFiler, MDF; “ASCH”). Wolf´s like dog breeds, namely Czechoslovakian wolfdog (n = 55), Saarloos wolfdog (n = 22), and samples of the Eurasian wolf (n = 21) were selected for their close genetic relationship. Also, German Shepherd (n = 26) breed was included as a donor of dog genome for the Czechoslovakian wolfdog.Overall 228 alleles were detected using 20 STR markers (MDF 11 and “ASCH” 9 loci). Number of alleles ranged from 3 to 23 per locus, with median 11 alleles per locus for MDF and 10 for “ASCH”. Both panels showed similar level of variability in the means of number of alleles per locus (k) and observed heterozygostity (HO) as there were not found statistically significant differences (Mann-Whithey U-test; p = 0.85 for k, p = 0.88 for HO). A group of wolves showed the highest variability unlike Saarloos wolfdog with very low variability within all measured parameters, although such differences were statistically significant only for k parameter of MDF panel (Kruskal-Wallis ANOVA; p = 0.0003) and no other groups were different. Both microsatellite panels were able correctly distinguish 3 dog breeds and wolfs as was verified by STRUCTURE programme and several potential hybrids were identified. Moreover, this pilot analysis amenable creation of allelic ladders for MDF and “ASCH” panels and thus ensure consistency and reliability of future study with extended number of samples.