Comparative QTL mapping of fruit size and shape in tomato and pepper

Abstract

Fruit size and shape are among the most important traits that were under selection during domestication of the fruit-bearing Solanaceae crops, tomato and pepper. To determine the level of conservation of the locations of quantitative trait locus (QTL) controlling these traits in the two species, we conducted whole genome comparative QTL analysis for fruit weight, pericarp thickness, and fruit shape. The pepper QTLs data were obtained from previous studies using two mapping populations from crosses of the same blocky-type parent, cv. Maor (Capsicum annuum), with small-fruited accessions of C. annuum and C. frutescens. The tomato QTLs data were derived from the analysis of two populations containing introgressions from Solanum pennellii and S. habrochaites in the background of the cultivated tomato S. lycopersicum. A total of 95 QTLs in 34 genomic regions were detected in the four populations. Most of the QTLs (52%, 64%, and 89% for fruit weight, pericarp thickness, and fruit shape, respectively) were popul...