Abstract
Parallel Factor Analysis (PARAFAC) is a well‐established method for characterizing dissolved organic matter (DOM). While methods for sample processing and PARAFAC analysis are well defined and robust, subsequent classification of DOM fluorescence components and comparisons of components among studies remain highly qualitative. Because these comparisons often guide the interpretation of subsequent data, it is important that quantitatively accurate comparisons be made. We developed a statistical tool, comPARAFAC, using a modified Tucker's Congruence Coefficient (mTCC), an established method of factor comparison, to provide a quantitative basis for comparing models. To develop and test this tool we used mTCC to compare factors from 35 DOM fluorescence studies using Parallel Factor Analysis (PARAFAC) in marine and freshwater environments. We compared mTCC‐guided component matching with qualitative comparisons made in the literature to describe the current perceptions of component equivalence. Based on our analysis, 21% of the direct comparisons made using the qualitative approach are potentially erroneous, whereas possible matches are missed 14% of the time using that same approach. The procedure and accompanying PARAFAC model library for performing quantitative mTCC‐guided comparisons are available as an R package (see Web Appendix A). This method simplifies and standardizes the process by which researchers identify and compare fluorescent DOM components across studies.
Highlights
Infrared spectroscopy (Pernet-Coudrier et al 2010), 13C NMR spectroscopy (Mladenov et al 2007), and high resolution mass spectroscopy (Sleighter and Hatcher 2008) have been used to define specific molecular structures and formulas present in dissolved organic matter (DOM)
Parallel Factor Analysis (PARAFAC) analysis of DOM has shown that labile DOM fractions are critical for organic N and P cycling (Lutz et al 2012; Mineau et al 2013) and that specific processes like denitrification may depend on organic matter quality (Barnes et al 2012)
PARAFAC analysis is considered a robust method for analyzing composition in the fluorescent fraction of the DOM pool, and is widely used in terrestrial (Ohno and Bro 2006), marine (Stedmon et al 2003), and freshwater studies (Holbrook et al 2006)
Summary
Thomas B.; Ohno, Tsutomu; and Simon, Kevin, "ComPARAFAC: a library and tools for rapid and quantitative comparison of dissolved organic matter components resolved by Parallel Factor Analysis." (2014). Stats, and author profiles for this publication at: https://www.researchgate.net/publication/263009502. ComPARAFAC: a library and tools for rapid and quantitative comparison of dissolved organic matter components resolved by. 4 authors, including: Thomas B Parr University of Delaware 39 PUBLICATIONS 77 CITATIONS
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