Abstract
Protease-producing bacteria play vital roles in degrading organic matter of aquaculture system, while the knowledge of diversity and bacterial community structure of protease-producing bacteria is limited in this system, especially in the tropical region. Herein, 1,179 cultivable protease-producing bacterial strains that belonged to Actinobacteria, Firmicutes, and Proteobacteria were isolated from tropical aquaculture systems, of which the most abundant genus was Bacillus, followed by Vibrio. The diversity and relative abundance of protease-producing bacteria in sediment were generally higher than those in water. Twenty-one genera from sediment and 16 genera from water were identified, of which Bacillus dominated by Bacillus hwajinpoensis in both and Vibrio dominated by Vibrio owensii in water were the dominant genera. The unique genera in sediment or water accounted for tiny percentage may play important roles in the stability of community structure. Eighty V. owensii isolates were clustered into four clusters (ET-1–ET-4) at 58% of similarity by ERIC-PCR (enterobacterial repetitive intergenic consensus-polymerase chain reaction), which was identified as a novel branch of V. owensii. Additionally, V. owensii strains belonged to ET-3 and ET-4 were detected in most aquaculture ponds without outbreak of epidemics, indicating that these protease-producing bacteria may be used as potential beneficial bacteria for wastewater purification. Environmental variables played important roles in shaping protease-producing bacterial diversity and community structure in aquaculture systems. In sediment, dissolved oxygen (DO), chemical oxygen demand (COD), and salinity as the main factors positively affected the distributions of dominant genus (Vibrio) and unique genera (Planococcus and Psychrobacter), whereas temperature negatively affected that of Bacillus (except B. hwajinpoensis). In water, Alteromonas as unique genus and Photobacterium were negatively affected by NO3−-N and NO2−-N, respectively, whereas pH as the main factor positively affected the distribution of Photobacterium. These findings will lay a foundation for the development of protease-producing bacterial agents for wastewater purification and the construction of an environment-friendly tropical aquaculture model.
Highlights
Aquaculture as an important food production has become an important economic activity in many countries (Hamza et al, 2017; Santos and Ramos, 2018)
Eighty V. owensii isolates were clustered into four clusters (ET-1–ET-4) at 58% of similarity by ERIC-PCR, which was identified as a novel branch of V. owensii
All of the isolates belonged to three phyla, Actinobacteria, Firmicutes, and Proteobacteria, and classified into 27 genera dominated by Bacillus (37.7%) and Vibrio (28.1%) genera (Figure 1, “Water & Sediment” bars), of which Firmicutes accounted for the highest proportion
Summary
Aquaculture as an important food production has become an important economic activity in many countries (Hamza et al, 2017; Santos and Ramos, 2018). With the rapid development of aquaculture industry, a large number of animal residues, residual feed, and excrement have been produced, thereby aggravating the accumulation of organic matter in aquaculture (Lin and Chen, 2001, 2003; Kuhn et al, 2010; Guo et al, 2016; Li et al, 2020; Mariane de Morais et al, 2020). The main sources of nitrogen and carbon of aquaculture are from the particulate organic matters containing large amounts of proteins and amino acids. Particulate organic matter is difficult to be dissolved, which should be first decomposed into dissolved form. The dissolved organic matter can be transformed into nitrogen gas by ammonification, nitrification, and denitrification. Bacteria play key roles in these processes by secreting degradation enzymes (Olson and Lesser, 2013; Su et al, 2020)
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