Abstract

BackgroundCollagens are the most abundant proteins in extra cellular matrix and important components of tumor microenvironment. Recent studies have showed that aberrant expression of collagens can influence tumor cell behaviors. However, their roles in hepatocellular carcinoma (HCC) are poorly understood.MethodsIn this study, we screened all 44 collagen members in HCC using whole transcriptome sequencing data from the public datasets, and collagen type IV alpha1 chain (COL4A1) was identified as most significantly differential expressed gene. Expression of COL4A1 was detected in HCC samples by quantitative real-time polymerase chain reaction (qRT-PCR), western blot and immunohistochemistry (IHC). Finally, functions and potential mechanisms of COL4A1 were explored in HCC progression.ResultsCOL4A1 is the most significantly overexpressed collagen gene in HCC. Upregulation of COL4A1 facilitates the proliferation, migration and invasion of HCC cells through FAK-Src signaling. Expression of COL4A1 is upregulated by RUNX1 in HCC. HCC cells with high COL4A1 expression are sensitive to the treatment with FAK or Src inhibitor.ConclusionCOL4A1 facilitates growth and metastasis in HCC via activation of FAK-Src signaling. High level of COL4A1 may be a potential biomarker for diagnosis and treatment with FAK or Src inhibitor for HCC.

Highlights

  • Collagens are the most abundant proteins in extra cellular matrix and important components of tumor microenvironment

  • Collagen IV alpha1 chain (COL4A1) is upregulated in hepatocellular carcinoma (HCC) To identify the cancer-related collagen genes in HCC, we first analyzed expression level for all 44 members of collagen genes in HCC using RNA-seq data from The Cancer Genome Atlas (TCGA)-LIHC dataset. 31 of 44 (70.5%) collagen genes were differentially expressed in 374 liver cancer samples compared with 50 normal liver samples

  • In 50 paired HCC and normal liver samples from TCGA dataset, Collagen I alpha1 chain (COL1A1) and COL1A2 were only upregulated in 74% (37 of 50) of HCC samples, but COL4A1 and Collagen IV alpha2 chain (COL4A2) were upregulated in 100% (50 of 50) of HCC samples (Additional file 4: Figure S1A)

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Summary

Introduction

Collagens are the most abundant proteins in extra cellular matrix and important components of tumor microenvironment. Recent studies have showed that aberrant expression of collagens can influence tumor cell behaviors. Their roles in hepatocellular carcinoma (HCC) are poorly understood. There are at least 28 different types of collagen proteins encoded by 44 collagen genes [4] They are essential in extra cellular matrix (ECM) which is the major component in tumor microenvironment and can regulate tumor cell behaviors [5, 6]. Collagen type XI is highly expressed in breast cancer, colorectal cancer, and metastatic ovarian carcinoma [23,24,25]. The functions and mechanisms of collagen genes in HCC are still largely unknown

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