Abstract
Ngari virus (NRIV) has been mostly detected during concurrent outbreaks of Rift Valley fever virus (RVFV). NRIV is grouped in the genus Orthobunyavirus within the Bunyaviridae family and RVFV in the genus Phlebovirus in the family Phenuiviridae. Both are zoonotic arboviruses and can induce hemorrhagic fever displaying the same clinical picture in humans and small ruminants. To investigate if NRIV and its parental viruses, Bunyamwera virus (BUNV) and Batai virus (BATV), played a role during the Mauritanian RVF outbreak in 2015/16, we analyzed serum samples of sheep and goats from central and southern regions in Mauritania by quantitative real-time RT-PCR, serum neutralization test (SNT) and ELISA. 41 of 458 samples exhibited neutralizing reactivity against NRIV, nine against BATV and three against BUNV. Moreover, complete virus genomes from BUNV could be recovered from two sheep as well as two NRIV isolates from a goat and a sheep. No RVFV-derived viral RNA was detected, but 81 seropositive animals including 22 IgM-positive individuals were found. Of these specimens, 61 samples revealed antibodies against RVFV and at least against one of the three orthobunyaviruses. An indirect ELISA based on NRIV/BATV and BUNV derived Gc protein was established as complement to SNT, which showed high performance regarding NRIV, but decreased sensitivity and specificity regarding BATV and BUNV. Moreover, we observed high cross-reactivity among NRIV and BATV serological assays. Taken together, the data indicate the co-circulation of at least BUNV and NRIV in the Mauritanian sheep and goat populations.
Highlights
Ngari virus (NRIV), Bunyamwera virus (BUNV) and Batai virus (BATV) are members of the Bunyamwera serogroup in the genus Orthobunyavirus of the family Peribunyaviridae
Among the 492 serum samples tested consecutively for NRIV, BUNV, BATV and Rift Valley fever virus (RVFV) by quantitative real-time RT-PCR (qRT-PCR) assays, 10 samples were tested positive for BUNV/NRIV-derived RNA
A co-infection of the ruminant population with RVFV and NRIV was already described in Kenya and Somalia in 1997–1998 (Bowen et al, 2001) and in Mauritania in 2010 (Eiden et al, 2014)
Summary
Ngari virus (NRIV), Bunyamwera virus (BUNV) and Batai virus (BATV) are members of the Bunyamwera serogroup in the genus Orthobunyavirus of the family Peribunyaviridae. Sequence analysis showed that NRIV is a natural reassortant resulting from co-infection of BUNV and BATV, as NRIV possesses the M-segment of BATV combined with the S- and L-segments of BUNV (Briese et al, 2006) This reassortment probably led to an increased virulence, which is associated with hemorrhagic fever in humans and ruminants (Dutuze et al, 2018). To investigate the prevalence of RVFV and possible co-infection with NRIV, BATV, and BUNV in the small ruminant population, 492 serum samples of goats and sheep were collected in 2015 in southwestern Mauritania and analyzed by quantitative real-time RT-PCR (qRT-PCR), serum neutralization tests (SNT) specific for each virus, and commercial enzyme-linked immunosorbent assays (ELISA). We implemented ELISAs based on the glycoprotein Gc of each NRIV, BATV, and BUNV
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