Abstract

The gene Clusterin is a target for cancer therapy in clinical trials. The indication for intervention is up-regulated Clusterin expression. Clusterin has been reported to be deregulated in multiple cancer types, including colorectal cancer (CRC). However, for CRC the studies have disagreed on whether Clusterin is up- or down-regulated by neoplastic cells. In the present study we sought to clarify the expression and distribution of Clusterin mRNAs and proteins in normal and neoplastic colorectal tissue through laser microdissection, variant-specific real time RT-PCR, immunohistochemistry, immunofluorescence, Western blotting, and array-based transcriptional profiling. At the transcript level we demonstrated the expression of two novel Clusterin transcripts in addition to the known transcript, and at the protein level we demonstrated two Clusterin isoforms. Our analysis of normal epithelial cells revealed that among these, Clusterin was only expressed by rare neuroendocrine subtype. Furthermore our analysis showed that in the normal mucosa the majority of the observed Clusterin protein originated from the stromal compartment. In tumors we found that Clusterin was de novo synthesized by non-neuroendocrine cancer cells in approximately 25% of cases. Moreover we found that the overall Clusterin level in tumors often appeared to be lower than in normal mucosa due to the stromal compartment often being suppressed in tumors. Although Clusterin in normal neuroendocrine cells showed a basal localization, the localization in cancer cells was often apical and in some cases associated with apical secretion. Collectively our results indicate that Clusterin expression is very complex. We conclude that Clusterin expression is associated with neuroendocrine differentiation in normal epithelia and that the Clusterin observed in neoplastic cells is de novo synthesized. The cases with de novo synthesized Clusterin define a distinct subgroup of CRC that may be of clinical importance as anti-Clusterin therapeutics are now in clinical trials.

Highlights

  • The gene Clusterin is a target for cancer therapy in clinical trials

  • The objectives of the present study addressed the issues raised above and were as follows: 1) to identify potential CLU mRNA variants and validate their expression in colorectal tissue, 2) to investigate the expression levels of validated CLU transcripts in normal epithelia and cancer cells, 3) to resolve the controversy regarding the expression of CLU by neoplastic colorectal tissue, and [4] to investigate whether loss of genomic integrity at the CLU locus is associated with the deregulation of CLU observed in colorectal cancer (CRC)

  • CLU34 and CLU35 correspond to the two CLU transcript isoforms predicted by the National Center for Biotechnology Information (NCBI) Reference Sequence project, NM_001831 and NM_203339, respectively

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Summary

EXPERIMENTAL PROCEDURES

Patients—Seven normal mucosa samples and two adenocarcinoma samples were used to validate the expression of CLU mRNA variants by RT-PCR. Formalin-fixed and paraffin-embedded sections from two of the 15 pairs of normal and adenocarcinoma samples used for IHC were used for immunofluorescence analysis. DNA extracted from these pure cell subpopulations was used for single nucleotide polymorphism (SNP) array analysis (as published previously) [18] and for sequencing of the genomic CLU locus. An independent set of 119 samples (17 normal mucosa and 102 adenocarcinomas) were used for transcriptional profiling as described previously [19]. The dilution curve was created using a cDNA pool containing 2 ␮l of each of the test cDNAs. Loss of Heterozygosity and DNA Copy Number Analysis Using Single Nucleotide Polymorphism Arrays—Previously we have analyzed 15 pairs of matched germ line (blood) and laser-microdissected CRC samples by Affymetrix 10K XbaI SNP arrays [18]. The expression data were GC_RMA-normalized using ArrayAssist software (Stratagene, La Jolla, CA)

RESULTS
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DISCUSSION
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