Circular RNA as a Potential Biomarker for Forensic Age Prediction

Junyan Wang,Yanhao Zhao,Jin Feng,Chunyan Wang,Yangyan Wei,Shujin Li,Chaolong Lu,Bin Cong,Can Wang

doi:10.3389/fgene.2022.825443

Abstract

In forensic science, accurate estimation of the age of a victim or suspect can facilitate the investigators to narrow a search and aid in solving a crime. Aging is a complex process associated with various molecular regulations on DNA or RNA levels. Recent studies have shown that circular RNAs (circRNAs) upregulate globally during aging in multiple organisms such as mice and C.elegans because of their ability to resist degradation by exoribonucleases. In the current study, we attempted to investigate circRNAs’ potential capability of age prediction. Here, we identified more than 40,000 circRNAs in the blood of thirteen Chinese unrelated healthy individuals with ages of 20–62 years according to their circRNA-seq profiles. Three methods were applied to select age-related circRNA candidates including the false discovery rate, lasso regression, and support vector machine. The analysis uncovered a strong bias for circRNA upregulation during aging in human blood. A total of 28 circRNAs were chosen for further validation in 30 healthy unrelated subjects by RT-qPCR, and finally, 5 age-related circRNAs were chosen for final age prediction models using 100 samples of 19–73 years old. Several different algorithms including multivariate linear regression (MLR), regression tree, bagging regression, random forest regression (RFR), and support vector regression (SVR) were compared based on root mean square error (RMSE) and mean average error (MAE) values. Among five modeling methods, regression tree and RFR performed better than the others with MAE values of 8.767 years (S.rho = 0.6983) and 9.126 years (S.rho = 0.660), respectively. Sex effect analysis showed age prediction models significantly yielded smaller prediction MAE values for males than females (MAE = 6.133 years for males, while 10.923 years for females in the regression tree model). In the current study, we first used circRNAs as additional novel age-related biomarkers for developing forensic age estimation models. We propose that the use of circRNAs to obtain additional clues for forensic investigations and serve as aging indicators for age prediction would become a promising field of interest.

Highlights

Age prediction of an unknown individual can facilitate case investigations and disaster victim identification
To identify age-correlated circRNA candidates, we introduced three methods of feature dimension reduction, including false discovery rate (FDR), lasso regression (LASSO), and support vector machine (SVM)
The development of molecular methods for age prediction is valuable when the human specimens such as bloodstains are retrieved from crime scenes without morphological age features

Summary

Introduction

Age prediction of an unknown individual can facilitate case investigations and disaster victim identification. Several molecular methods were proposed, such as telomere shortening (Mensa et al, 2019), mitochondrial DNA deletion (Zapico and Ubelaker, 2016; Yang et al, 2020), signal-joint T-cell receptor excision circle (sjTRECs) (Yamanoi et al, 2018), and DNA methylation (DNAm) (Meng et al, 2019; Dias et al, 2020; Freire-Aradas et al, 2020). Among these biomarkers, the DNAm pattern was considered as the most promising agepredictive biomarkers for forensic and clinical use due to its high prediction accuracy. In light of various restrictions and challenges mentioned above, looking for other appropriate biomarkers in human blood is of great significance for forensic age estimation

Methods

Results

Conclusion