Abstract

Bactrocera dorsalis is an invasive polyphagous pest causing considerable ecological and economic damage worldwide. We report a high-quality chromosome-level genome assembly and combine various transcriptome data to explore the molecular mechanisms of its rapid adaptation to new environments. The expansions of the DDE transposase superfamily and key gene families related to environmental adaptation and enrichment of the expanded and unique gene families in metabolism and defence response pathways explain its environmental adaptability. The relatively high but not significantly different expression of heat-shock proteins, regardless of the environmental conditions, suggests an intrinsic mechanism underlying its adaptation to high temperatures. The mitogen-activated protein kinase pathway plays a key role in adaptation to new environments. The prevalence of duplicated genes in its genome explains the diversity in the B. dorsalis complex. These findings provide insights into the genetic basis of the invasiveness and diversity of B. dorsalis, explaining its rapid adaptation and expansion.

Highlights

  • Bactrocera dorsalis is an invasive polyphagous pest causing considerable ecological and economic damage worldwide

  • We hypothesised that elucidation of the genomic features of B. dorsalis followed by a comparative analysis with other tephritids and other economically significant insects could help understand the molecular mechanisms underlying the rapid adaptation of B. dorsalis to new environments

  • We sequenced the genome of B. dorsalis using single-molecule real-time sequencing (SMRT) (PacBio Sequel), paired-end sequencing (Illumina Hiseq), and high-throughput chromosome conformation capture (Hi-C) technique (Phase Genomics, Inc.)

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Summary

Introduction

Bactrocera dorsalis is an invasive polyphagous pest causing considerable ecological and economic damage worldwide. We hypothesised that elucidation of the genomic features of B. dorsalis followed by a comparative analysis with other tephritids and other economically significant insects could help understand the molecular mechanisms underlying the rapid adaptation of B. dorsalis to new environments. To test this hypothesis, this study developed a high-quality chromosome-scale assembly of the B. dorsalis genome using the PacBio and Illumina platforms assisted by the high-throughput chromosome conformation capture (Hi-C) technique. By combining various transcriptome data, we further investigated the genetic basis underlying its high invasiveness and rapid adaptation to new environments, which could facilitate developing effective prevention and control strategies to reduce damage caused by outbreaks of B. dorsalis

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