Abstract

Most enzymes are homodimers or higher order multimers. Cold‐active alkaline phosphatase from Vibrio splendidus (VAP) transitions into a dimer with very low activity under mild denaturation conditions. The desire to understand why this dimer fails to efficiently catalyse phosphomonoester hydrolysis led us to investigate interfacial communication between subunits. Here, we studied in detail the unfolding mechanism at two pH values and in the presence or absence of sodium chloride. At pH 8.0, the denaturation model had to include an inactive dimer intermediate and follow the pathway: N 2 → I 2 → 2U. At pH 10.5, the model was of a two‐state nature. Enzyme activity was not recovered under several examined refolding conditions. However, in the presence of 0.5 m NaCl, the enzyme was nearly fully reactivated after urea treatment. Thermal inactivation experiments were biphasic where the inactivation could be detected using CD spectroscopy at 190–200 nm. By incorporating a bimane fluorescence probe at the dimer interface, we could monitor inactivation/denaturation at two distinct sites at the dimer interface. A change in bimane fluorescence at both sites was observed during inactivation, but prior to the global unfolding event. Furthermore, the rate of change in bimane fluorescence correlated with inactivation rates at 40 °C. These results indicate and support the hypothesis that the subunits of VAP are only functional in the dimeric state due to the cooperative nature of the reaction mechanism when proper crosstalk between subunits is facilitated.

Highlights

  • Most enzymes are homodimers or higher order multimers

  • These results indicate and support the hypothesis that the subunits of Vibrio alkaline phosphatase (VAP) are only functional in the dimeric state due to the cooperative nature of the reaction mechanism when proper crosstalk between subunits is facilitated

  • The benefit of homodimer formation has been attributed to several factors, including increased stability by formation of interface contacts [1,2], extra sites becoming available for ligand binding [3], faster folding being facilitated that minimizes occurrence of misfolded intermediates [4] and the provision of mechanisms for allosteric regulation [5]

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Summary

Introduction

Most enzymes are homodimers or higher order multimers. Cold-active alkaline phosphatase from Vibrio splendidus (VAP) transitions into a dimer with very low activity under mild denaturation conditions. The rate of change in bimane fluorescence correlated with inactivation rates at 40 °C These results indicate and support the hypothesis that the subunits of VAP are only functional in the dimeric state due to the cooperative nature of the reaction mechanism when proper crosstalk between subunits is facilitated. Bloch and Schlesinger (1974) hybridized an inactive Escherichia coli AP (ECAP) variant with the wild-type, which showed half the activity of the wild-type enzyme [15] This suggested that only one subunit was needed for catalytic activity. Inactive monomers have been frequently observed as a part of ECAP dimers, indicating that monomers are not independent [16,17,18], and the monomers by themselves are generally inactive These results do suggest that an interface is needed to properly form the active sites by some global residue-positioning induced through the interface

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