Abstract

Chemotaxis, the ability of motile bacteria to direct their movement in gradients of attractants and repellents, plays an important role during the rhizosphere colonization by rhizobacteria. The rhizosphere is a unique niche for plant–microbe interactions. Root exudates are highly complex mixtures of chemoeffectors composed of hundreds of different compounds. Chemotaxis towards root exudates initiates rhizobacteria recruitment and the establishment of bacteria–root interactions. Over the last years, important progress has been made in the identification of root exudate components that play key roles in the colonization process, as well as in the identification of the cognate chemoreceptors. In the first part of this review, we summarized the roles of representative chemoeffectors that induce chemotaxis in typical rhizobacteria and discussed the structure and function of rhizobacterial chemoreceptors. In the second part we reviewed findings on how rhizobacterial chemotaxis and other root–microbe interactions promote the establishment of beneficial rhizobacteria-plant interactions leading to plant growth promotion and protection of plant health. In the last part we identified the existing gaps in the knowledge and discussed future research efforts that are necessary to close them.

Highlights

  • Plant-associated microbiomes, referred to as the second genome of the plant [1], are crucial for plant health, such as growth promotion and disease resistance, etc. [2,3].These microbiomes have formed a multifunction ‘holobiont’ with their plant host during evolution [4]

  • Significant progress has been made in understanding rhizosphere chemotaxis, resulting in (i) the identification of chemoeffectors sensed by the rhizobacteria, (ii) the structural and functional characterization of a great diversity of rhizobacterial methyl-accepting chemotaxis proteins (MCPs), and (iii) the determination of the influence of rhizosphere chemotaxis on root colonization, biofilm formation, and other root–microbe interactions

  • The broadest ligand range of dCache ligand binding domain (LBD) containg MCPs involved in root exudate chemotaxis is McpA of B. velezensis SQR9 that responds to 5 amino acids, 10 organic acids, and 6 other compounds [24,76,80]

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Summary

Introduction

Plant-associated microbiomes, referred to as the second genome of the plant [1], are crucial for plant health, such as growth promotion and disease resistance, etc. [2,3]. Significant progress has been made in understanding rhizosphere chemotaxis, resulting in (i) the identification of chemoeffectors sensed by the rhizobacteria, (ii) the structural and functional characterization of a great diversity of rhizobacterial MCPs, and (iii) the determination of the influence of rhizosphere chemotaxis on root colonization, biofilm formation, and other root–microbe interactions. These advances will be summarised in this review and future research objectives are discussed in order to close the existing gaps of knowledge

Chemoeffectors in Root Exudates Sensed by Beneficial Rhizobacteria
Rhizobacterial MCPs Sensing the Rhizosphere Chemoeffectors
Role of Chemotaxis in Root–Microbe Interactions in Rhizosphere
Findings
Conclusions and Prospects
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