Chemical evolution of protein folding in amino acids

Abstract

We point out why the evolution chose just twenty amino acids which further form proteins and higher cellular structures of molecules in organisms. We use the properties of the loop braid group in the transcription process to define the total physiology for amino acid subunits. We use them to visualize the protein secondary structure in the V3loop, HIV viral glycoprotein, from all possible 64 codons. With adding some extra properties to the energy-momentum tensor equation, we can explain the role of coupling behavior field in junk DNA and noncoding RNA in human chromosomes as transition states between the DNA, RNA, and protein at excited state with the level of excitation n=6 in a new theory called the theory of Fermi-Dirac superdistribution in the gene expression.