Abstract
To understand the proximate and ultimate causes that shape acoustic communication in animals, objective characterizations of the vocal repertoire of a given species are critical, as they provide the foundation for comparative analyses among individuals, populations and taxa. Progress in this field has been hampered by a lack of standard in methodology, however. One problem is that researchers may settle on different variables to characterize the calls, which may impact on the classification of calls. More important, there is no agreement how to best characterize the overall structure of the repertoire in terms of the amount of gradation within and between call types. Here, we address these challenges by examining 912 calls recorded from wild chacma baboons (Papio ursinus). We extracted 118 acoustic variables from spectrograms, from which we constructed different sets of acoustic features, containing 9, 38, and 118 variables; as well 19 factors derived from principal component analysis. We compared and validated the resulting classifications of k-means and hierarchical clustering. Datasets with a higher number of acoustic features lead to better clustering results than datasets with only a few features. The use of factors in the cluster analysis resulted in an extremely poor resolution of emerging call types. Another important finding is that none of the applied clustering methods gave strong support to a specific cluster solution. Instead, the cluster analysis revealed that within distinct call types, subtypes may exist. Because hard clustering methods are not well suited to capture such gradation within call types, we applied a fuzzy clustering algorithm. We found that this algorithm provides a detailed and quantitative description of the gradation within and between chacma baboon call types. In conclusion, we suggest that fuzzy clustering should be used in future studies to analyze the graded structure of vocal repertoires. Moreover, the use of factor analyses to reduce the number of acoustic variables should be discouraged.
Highlights
Objective classifications of animal signals are a prerequisite for addressing a broad array of questions, both at the proximate and ultimate level
When we compared the human-expert reference classification with the cluster solution, we found that the matching success increased with an increasing number of acoustic features
We conclude that the usage of a high number of acoustic features results in better cluster solutions
Summary
Objective classifications of animal signals are a prerequisite for addressing a broad array of questions, both at the proximate and ultimate level. Much progress has been made in developing quantitative methods to objectively characterize single acoustic patterns [1,2]. Exists on how to objectively characterize the structure of the entirety of a species, that is, its vocal repertoire. Being able to compare the vocal repertoires of different species is crucial to test hypotheses regarding the selective pressures that shape signal repertoires. It was suggested that increased social complexity gives rise to increased vocal complexity [6,7]. To rigorously test this assumption, quantitative assessments of vocal complexity are needed. Broader comparative or meta-analyses are hampered because studies from different labs often lack consistency in the methods used and in the categorization criteria applied
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