Abstract

To study the mechanisms of perception and cognition, neural measurements must be made during behavior. A goal of the Allen Brain Observatory is to map the activity of distinct cortical cell classes underlying visual and behavioral processing. Here we describe standardized methodology for training head-fixed mice on a visual change detection task, and we use our paradigm to characterize learning and behavior of five GCaMP6-expressing transgenic lines. We used automated training procedures to facilitate comparisons across mice. Training times varied, but most transgenic mice learned the behavioral task. Motivation levels also varied across mice. To compare mice in similar motivational states we subdivided sessions into over-, under-, and optimally motivated periods. When motivated, the pattern of perceptual decisions were highly correlated across transgenic lines, although overall performance (d-prime) was lower in one line labeling somatostatin inhibitory cells. These results provide important context for using these mice to map neural activity underlying perception and behavior.

Highlights

  • Goal-oriented behavior involves coordinated neural activity across brain regions, but the cellular mechanisms mediating these activity dynamics are not fully understood

  • We previously developed a standardized physiological pipeline—the Allen Brain Observatory—to monitor cellular population activity using 2photon calcium imaging during passive visual stimulation in mice (De Vries et al, 2020)

  • These experiments used transgenic Cre driver mouse lines to express the genetically encoded calcium indicator GCaMP6 in specific cortical cell subpopulations to monitor activity based on changes in cellular fluorescence

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Summary

Introduction

Goal-oriented behavior involves coordinated neural activity across brain regions, but the cellular mechanisms mediating these activity dynamics are not fully understood. We previously developed a standardized physiological pipeline—the Allen Brain Observatory—to monitor cellular population activity using 2photon calcium imaging during passive visual stimulation in mice (De Vries et al, 2020) These experiments used transgenic Cre driver mouse lines to express the genetically encoded calcium indicator GCaMP6 in specific cortical cell subpopulations to monitor activity based on changes in cellular fluorescence. To expand on these passive viewing datasets, we are adapting our existing pipeline to include GCaMP6 measurements from mice performing visually guided behaviors. Candidate tasks must support head-fixed physiological measurements using our standardized instruments

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