Characteristics of bacterial community and volatile fatty acids in the gastrointestinal tract of Tarim wapiti

Abstract

Tarim wapiti (Cervus elaphus yarkandensis) may have a complex gut microbiota that contributes to its unique qualities due to its biological characteristics of tolerance to coarse feed and salt-alkali. The contents of the forestomach (rumen, reticulum, and omasum), abomasum, and small intestine (duodenum, jejunum and ileum) were taken in this investigation from six Tarim wapiti. The objective was to assess the content of volatile fatty acids (VFAs) and microbiological diversity through 16S rDNA. The results showed that acetate, propionate, butyrate, and valerate concentrations were much higher in the forestomach compared to the small intestine. The communities of bacteria were abundant and diversified in the forestomach and abomasum compared to the small intestine. Bacteroidetes were significantly more abundant in the forestomach and abomasum than in the small intestine, but Firmicutes were the reverse. The predominant bacterial genera identified in the forestomach and abomasum were Rikenellaceae RC9 gut group, Prevotella and F082; Clostridium sensu stricto 1, Acetitomaculum, Paeniclostridium, and Romboutsia were the main bacterial genera in the small intestine. The relative abundance of genes for microbial energy metabolism functions was substantially reduced across the rumen to the reticulum, across the abomasum to the duodenum for carbohydrate metabolism and lipid metabolism functions, and across the jejunum to the ileum for lipid metabolism and energy metabolism functions. In addition, VFAs were found to be positively correlated with dominant bacteria in forestomach and abomasum, and negatively correlated with dominant bacteria in small intestine. According to the study, Tarim wapiti have developed a unique and distinct dominant bacterial community in its forestomach, abomasum, and intestines.