Characterisation and cross-amplification of 21 novel microsatellite loci for the dusky shark, Carcharhinus obscurus

Abstract

The dusky shark Carcharhinus obscurus risks excessive fisheries exploitation worldwide due to its low productivity. Genetic monitoring is an effective way of resolving species stock structure, genetic diversity, and forensically identifying processed animals. Here we present the first C. obscurus species-specific microsatellite loci. Twenty-one di- to tetra-nucleotide loci with between 2 and 20 alleles per locus were developed. Observed heterozygosity ranged from 0.28 to 0.91 with only one locus slightly deviating from Hardy–Weinberg equilibrium. No significant evidence for null alleles or linkage disequilibrium was detected. These loci were cross-amplified in three related species. Seventeen, twelve, and eighteen loci exhibited polymorphism in sandbar shark Carcharhinus plumbeus, spinner shark Carcharhinus brevipinna, galapagos shark Carcharhinus galapagensis, respectively. Investigations into C. obscurus will benefit from these loci which possess attributes suitable for population-scale and individual-scale analyses. Additionally locus cross-amplification will facilitate research for these species with few existing microsatellites and similarly vulnerable life-histories.