Challenges and Opportunities for Characterizing the Assembly of Nuclear Envelope Proteins by Fluorescence Fluctuation Spectroscopy

Abstract

The nuclear envelope (NE), consisting of two membranes separated by a thin perinuclear space, has proven to be a challenging environment for measuring protein dynamics in living cells. First, exogenously expressed, fluorescently tagged proteins must be properly localized to the NE. Furthermore, undulations of the nuclear membranes complicate the application of fluorescence fluctuation spectroscopy (FFS) to proteins located within the perinuclear space by adding a slowly fluctuating signal. While this signal is absent for proteins associated with the nuclear membranes, distinguishing soluble from membrane-associated protein complexes by FFS presents a significant challenge since the diffusion time depends strongly on molecular size within the perinuclear space. Some proteins, such as the AAA+ ATPase TorsinA, may exist in both a membrane-associated and soluble form depending on the conditions in the cell. Determining the extent to which a protein associates with the membrane can provide valuable insight into its function within the cell. While diffusion time alone is insufficient to differentiate these populations, we explore whether the dependence of diffusion time on temperature can provide insight into a protein's localization within the NE. In addition, we explore how spatial correlations can be used to study the dynamics of proteins within the NE and the membrane undulations we previously reported. Finally, z-scan FFS provides a means to quantify the localization of proteins to the NE. These examples highlight the ways in which FFS techniques can be used to overcome the challenges of quantifying protein behavior in the NE of living cells. This work has been supported by a grant from the National Institutes of Health (R01 GM64589).