Abstract

As a crucial step for human reproduction, embryo implantation is a low-efficiency process. Despite rapid advances in recent years, the molecular mechanism underlying embryo implantation remains poorly understood. Here, we used the mouse as an animal model and generated a single-cell transcriptomic atlas of embryo implantation sites. By analyzing inter-implantation sites of the uterus as control, we were able to identify global gene expression changes associated with embryo implantation in each cell type. Additionally, we predicted signaling interactions between uterine luminal epithelial cells and mural trophectoderm of blastocysts, which represent the key mechanism of embryo implantation. We also predicted signaling interactions between uterine epithelial-stromal crosstalk at implantation sites, which are crucial for post-implantation development. Our data provide a valuable resource for deciphering the molecular mechanism underlying embryo implantation.

Highlights

  • Embryo implantation is a crucial step for human reproduction

  • Our study provides a valuable resource for understanding the molecular mechanisms underlying embryo implantation in mice

  • The implantation site in the uterus can be visualized after an intravenous injection of Chicago Blue B dye solution (Figure 1A)

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Summary

Introduction

Embryo implantation is a crucial step for human reproduction. This is a low-efficiency process and the implantation failure rate per menstrual cycle is approximately 70% [1,2]. Several studies have analyzed global gene expression changes between implantation sites and inter-implantation sites of mouse uterus using high-throughput transcriptomic approaches, providing a useful candidate gene list for further study of embryo implantation [6,7,8]. The limitation of these studies is that the whole uterus is used. In addition to whole uteri, isolated uterine luminal epithelium from implantation sites and inter-implantation sites by enzymes [9] and laser-capture microdissection (LCM) [10] have been subjected to high-throughput transcriptomic analysis. Our study provides a valuable resource for understanding the molecular mechanisms underlying embryo implantation in mice

Single-Cell Analysis of Embryo Implantation Site in Mouse Uterus
Inferring Uterine Epithelial-Stromal Crosstalk at the Implantation Site
Sample Collection
Single-Cell Dissociation of Mouse Uterus
Single-Cell RNA-Seq Library Preparation and Sequencing
Single-Cell RNA-Seq Data Analysis
Gene Ontology Analysis
Cell–Cell Communication Analysis
Pseudotime Analysis
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