Catabolite activator protein: DNA binding and transcription activation

Abstract

Recently determined structures of the Escherichia coli catabolite activator protein (CAP) in complex with DNA, and in complex with the RNA polymerase α subunit C-terminal domain (αCTD) and DNA, have yielded insights into how CAP binds DNA and activates transcription. Comparison of multiple structures of CAP–DNA complexes has revealed the contributions of direct and indirect readout to DNA binding by CAP. The structure of the CAP–αCTD–DNA complex has provided the first structural description of interactions between a transcription activator and its functional target within the general transcription machinery. Using the structure of the CAP–αCTD–DNA complex, the structure of an RNA polymerase–DNA complex, and restraints from biophysical, biochemical and genetic experiments, it has been possible to construct detailed three-dimensional models of intact class I and class II transcription activation complexes.