Abstract
Developing embryos exhibit a robust capability to reduce phenotypic variations that occur naturally or as a result of experimental manipulation. This reduction in variation occurs by an epigenetic mechanism called canalization, a phenomenon which has resisted understanding because of a lack of necessary molecular data and of appropriate gene regulation models. In recent years, quantitative gene expression data have become available for the segment determination process in the Drosophila blastoderm, revealing a specific instance of canalization. These data show that the variation of the zygotic segmentation gene expression patterns is markedly reduced compared to earlier levels by the time gastrulation begins, and this variation is significantly lower than the variation of the maternal protein gradient Bicoid. We used a predictive dynamical model of gene regulation to study the effect of Bicoid variation on the downstream gap genes. The model correctly predicts the reduced variation of the gap gene expression patterns and allows the characterization of the canalizing mechanism. We show that the canalization is the result of specific regulatory interactions among the zygotic gap genes. We demonstrate the validity of this explanation by showing that variation is increased in embryos mutant for two gap genes, Krüppel and knirps, disproving competing proposals that canalization is due to an undiscovered morphogen, or that it does not take place at all. In an accompanying article in PLoS Computational Biology (doi:10.1371/journal.pcbi.1000303), we show that cross regulation between the gap genes causes their expression to approach dynamical attractors, reducing initial variation and providing a robust output. These results demonstrate that the Bicoid gradient is not sufficient to produce gap gene borders having the low variance observed, and instead this low variance is generated by gap gene cross regulation. More generally, we show that the complex multigenic phenomenon of canalization can be understood at a quantitative and predictive level by the application of a precise dynamical model.
Highlights
IntroductionWaddington inferred developmental canalization of gene expression by noting that differentiation leads to the formation of discrete types of tissue, rather than a continuous blend, and that genotypic and environmental variation is suppressed at the phenotypic level in wild-type but not mutant organisms
These results demonstrate that the Bicoid gradient is not sufficient to produce gap gene borders having the low variance observed, and instead this low variance is generated by gap gene cross regulation
Waddington inferred developmental canalization of gene expression by noting that differentiation leads to the formation of discrete types of tissue, rather than a continuous blend, and that genotypic and environmental variation is suppressed at the phenotypic level in wild-type but not mutant organisms
Summary
Waddington inferred developmental canalization of gene expression by noting that differentiation leads to the formation of discrete types of tissue, rather than a continuous blend, and that genotypic and environmental variation is suppressed at the phenotypic level in wild-type but not mutant organisms. These points led him to state that ‘‘developmental reactions, as they occur in organisms submitted to natural selection, are in general canalized. This investigation puts us in contact with a number of recent investigations of variation in the gap gene system as we explain
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