Abstract

The divergence of fluorine-based systems and significance of their nascent non-covalent chemistry in molecular assemblies are presented in a brief review of the field. Emphasis has been placed to show that type-I and -II halogen-centered F···F long-ranged intermolecular distances viable between the entirely negative fluorine atoms in some fluoro-substituted dimers of C6H6 can be regarded as the consequence of significant non-covalent attractive interactions. Such attractive interactions observed in the solid-state structures of C6F6 and other similar fluorine-substituted aromatic compounds have frequently been underappreciated. While these are often ascribed to crystal packing effects, we show using first-principles level calculations that these are much more fundamental in nature. The stability and reliability of these interactions are supported by their negative binding energies that emerge from a supermolecular procedure using MP2 (second-order Møller-Plesset perturbation theory), and from the Symmetry Adapted Perturbation Theory, in which the latter does not determine the interaction energy by computing the total energy of the monomers or dimer. Quantum Theory of Atoms in Molecules and Reduced Density Gradient Non-Covalent Index charge-density-based approaches confirm the F···F contacts are a consequence of attraction by their unified bond path (and bond critical point) and isosurface charge density topologies, respectively. These interactions can be explained neither by the so-called molecular electrostatic surface potential (MESP) model approach that often demonstrates attraction between sites of opposite electrostatic surface potential by means of Coulomb’s law of electrostatics, nor purely by the effect of electrostatic polarization. We provide evidence against the standalone use of this approach and the overlooking of other approaches, as the former does not allow for the calculation of the electrostatic potential on the surfaces of the overlapping atoms on the monomers as in the equilibrium geometry of a complex. This study thus provides unequivocal evidence of the limitation of the MESP approach for its use in gaining insight into the nature of reactivity of overlapped interacting atoms and the intermolecular interactions involved.

Highlights

  • Fluorine, the first member of the halogen family, has an exceptionally interesting, almost magical, chemistry

  • The interaction between atomic sites of similar electrostatic potential centered on two negatively charged, or two positively charged, polarizable molecules cannot be precisely described by Coulomb’s law only because the interaction energy between them stems from several contributions, including charge-charge, charge-induced dipole, charge-quadrupole, induced dipole-induced dipole, quadrupole-quadrupole and other higher-order effects that account for the importance of dispersion

  • From the nature of the molecular electrostatic surface potential (MESP), we have shown that the fluorine in these molecules is entirely negative, both along its axial and equatorial regions; a similar conclusion on the negativity of the F atom was arrived at using the computed Quantum Theory of Atoms in Molecules (QTAIM) integrated charges

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Summary

Introduction

The first member of the halogen family, has an exceptionally interesting, almost magical, chemistry. The widespread application of fluorine in drug design benefits from its distinctive properties because it can positively modulate several pharmacokinetics properties, inter alia, lipophilicity, eletrophilicity, metabolic stability, and chemical stability [3]. These attributes are of significant interest to medicinal chemists due to their possible application in anticancer, antimicrobial, anti-inflammatory and antiviral activity

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