Abstract

The high-affinity interaction between biotin and streptavidin has opened avenues for using recombinant proteins with site-specific biotinylation to achieve efficient and directional immobilization. The site-specific biotinylation of proteins carrying a 15 amino acid long Biotin Acceptor Peptide tag (BAP; also known as AviTag) is effected on a specific lysine either by co-expressing the E. coli BirA enzyme in vivo or by using purified recombinant E. coli BirA enzyme in the presence of ATP and biotin in vitro. In this paper, we have designed a T7 promoter-lac operator-based expression vector for rapid and efficient cloning, and high-level cytosolic expression of proteins carrying a C-terminal BAP tag in E. coli with TEV protease cleavable N-terminal deca-histidine tag, useful for initial purification. Furthermore, a robust three-step purification pipeline integrated with well-optimized protocols for TEV protease-based H10 tag removal, and recombinant BirA enzyme-based site-specific in vitro biotinylation is described to obtain highly pure biotinylated proteins. Most importantly, the paper demonstrates superior sensitivities in indirect ELISA with directional and efficient immobilization of biotin-tagged proteins on streptavidin-coated surfaces in comparison to passive immobilization. The use of biotin-tagged proteins through specific immobilization also allows more efficient selection of binders from a phage-displayed naïve antibody library. In addition, for both these applications, specific immobilization requires much less amount of protein as compared to passive immobilization and can be easily multiplexed. The simplified strategy described here for the production of highly pure biotin-tagged proteins will find use in numerous applications, including those, which may require immobilization of multiple proteins simultaneously on a solid surface.

Highlights

  • In this paper, using five secretory proteins of Mycobacterium tuberculosis (M. tuberculosis) H37Rv, namely, MTC28 (Rv0040c), MPT63 (Rv1926c), MPT64 (Rv1980c), Ag85A (Rv3804c), and Ag85B (Rv1886c), we have described a streamlined workflow for cloning, cytosolic expression, and purification of the expressed protein, followed by its in vitro biotinylation to obtain highly pure recombinant protein carrying biotin attached to the Biotin Acceptor Peptide tag (BAP) tag present at the C-terminus

  • A T7 promoter-lac operator-based IPTG/lactose inducible vector pVMExp14367 was employed for expression of recombinant proteins in E. coli carrying N-terminal deca-histidine tag (H10) followed by Tobacco Etch Virus (TEV) protease site and C-terminal Biotin Acceptor Peptide (BAP) tag with appropriate glycine-serine rich spacers (Fig 1)

  • We have described a streamlined pipeline for easy and robust cloning, high-level cytosolic expression, purification, and in vitro biotinylation to produce biotin-tagged proteins (Fig 2)

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Summary

Introduction

Schatz and co-workers identified a 14-mer peptide mimic that contains a lysine residue, which is the target for site-specific biotinylation by BirA enzyme and is functionally similar to its natural substrate BCCP [23] This was later extended to a 15-mer peptide sequence “GLNDIFEAQKIEWHE” (Biotin Acceptor Peptide; BAP; known as AviTag), which can be translationally fused at either N or C-terminus of proteins to produce biotin-tagged proteins [18]. A robust three-step chromatography pipeline integrated with well-optimized and efficient protocols for TEV protease-based H10 tag removal, and recombinant E. coli BirA enzyme-based site-specific in vitro biotinylation has been described to obtain purified proteins (devoid of the N-terminal H10 tag) carrying biotin residue at the C-terminus. Rabbit polyclonal sera against purified polyhistidine-tagged proteins (without BAP tag) were produced by a commercial source, Bangalore Genei, India (Merck), and purified in the laboratory

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