Abstract
Pythium myriotylum is a notorious soil-borne oomycete that causes post-emergence damping-off in chili pepper. Of various disease management strategies, utilization of plant growth promoting rhizobacteria (PGPR) in disease suppression and plant growth promotion is an interesting strategy. The present study was performed to isolate and characterize PGPR indigenous to the chili rhizosphere in Pakistan, and to test the potential to suppress the damping-off and plant growth promotion in chili. Out of a total of 28 antagonists, eight bacterial isolates (4a2, JHL-8, JHL-12, 1C2, RH-24, 1D, 5C, and RH-87) significantly suppressed the colony growth of P. myriotylum in a dual culture experiment. All the tested bacterial isolates were characterized for biochemical attributes, and 16S rRNA sequence based phylogenetic analysis identified these isolates as Flavobacterium spp., Bacillus megaterium, Pseudomonas putida, Bacillus cereus, and Pseudomonas libanensis. All the tested bacterial isolates showed positive test results for ammonia production, starch hydrolase (except 4a2), and hydrogen cyanide production (except 4a2 and 1D). All the tested antagonists produced indole-3-acetic acid (13.4–39.0 μg mL–1), solubilized inorganic phosphate (75–103 μg mL–1), and produced siderophores (17.1–23.7%) in vitro. All the tested bacterial isolates showed varying levels of susceptibility and resistance response against different antibiotics and all these bacterial isolates were found to be non-pathogenic to chili seeds and notably enhanced percentage seed germination, plumule, redical length, and vigor index over un-inoculated control. Additionally, under pathogen pressure, bacterization increased the defense related enzymes such as Peroxidase (PO), polyphenol oxidase (PPO), and phenylalanine ammonia-lyase (PAL) activates. Moreover, the treatment of chili seeds with these bacterial isolates significantly suppressed the damping-off caused by P. myriotylum and improved PGP traits compared to the control. In addition, a positive correlation was noticed between shoot, root length, and dry shoot and root weight, and there was a negative correlation between dry shoot, root weight, and seedling percentage mortality. These results showed that native PGPR possesses multiple traits beneficial to the chili plants and can be used to develop eco-friendly and effective seed treatment formulation as an alternative to synthetic chemical fungicides.
Highlights
Chili pepper (Capsicum annuum L.) is a member of Solanaceae family
A total of 13 isolates of P. myriotylum were recovered from infected chili roots showing characteristic symptoms of dampingoff disease on corn meal agar medium (CMA)
Internal transcribed spacer regions (ITS1 and ITS2) were amplified by polymerase chain reaction (PCR) and final sequences were submitted to the GenBank database under the accessions MF143429 and MF143430
Summary
Chili pepper (Capsicum annuum L.) is a member of Solanaceae family It is an important vegetable crop worldwide, and is cultivated in Asia on large scale (Tariq et al, 2014). Of the different microbial diseases that affect this plant, the damping-off and root rot disease caused by Pythium myriotylum Drechsler. A study has shown that damping-off may affect from 5 to 80% of the seedlings and result in huge economic losses for farmers (Lamichhane et al, 2017). This disease is characterized by the typical symptoms of rotten roots, necrosis, wilt, water soaking lesions, and the decay of young seedlings (Horst, 2013). Sunken lesions can be seen on the stem at soil level or below the soil on roots, causing the seedling to fall over the ground (Smith, 1975) and excessive soil moisture leads to the development and movement of zoospores which attack the host plants
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