Abstract

Scott Markel is Vice President, International Society for Computational Biology (ISCB); Co-Chair, ISCB Publications Committee; and Associate Editor, PLoS Computational Biology. The BioLINK SIG meeting has been regularly held in association with the ISMB conference (Intelligent Systems for Molecular Biology—the annual conference of the International Society for Computational Biology) since 2001, focusing on the development and application of resources and tools for biomedical text mining. The SIG (Special Interest Group) is interdisciplinary in nature, and brings together researchers applying natural language processing, text mining, and information extraction and retrieval in the biomedical domain with scientists from bioinformatics and biology. This year's meeting at the combined ISMB/ECCB (European Conference on Computational Biology) conference in Stockholm includes two new sessions, one dedicated to extraction of information from images, and one devoted to the future of scientific publishing. The publishing session, co-organized by BioLINK with the collaboration of the ISCB Publications Committee (http://www.iscb.org/iscb-leadership-a-staff-/117) and PLoS Computational Biology (http://www.ploscompbiol.org), has been added in response to the very favorable reviews of last year's Special Session on the same topic. The session format has been expanded to two two-hour segments, both of which will be open to ISMB conference registrants. The first segment will feature scientific presentations from David Shotton, Anita de Waard, Dietrich Rebholz-Schuhmann, and Philip E. Bourne. The second segment will include presentations from journal publishers and will finish with an open discussion.

Highlights

  • The BioLINK SIG meeting has been regularly held in association with the ISMB conference (Intelligent Systems for Molecular Biology—the annual conference of the International Society for Computational Biology) since 2001, focusing on the development and application of resources and tools for biomedical text mining

  • The session format has been expanded to two two-hour segments, both of which will be open to ISMB conference registrants

  • I will explain what we achieved by means of a live link to the online enhanced paper, discuss the significance of this work in terms of recent developments in automated text mining, and consider the future of semantic publishing as part of mainstream research journal production workflows

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Summary

Introduction

BioLINK Special Interest Group Session on the Future of Scientific Publishing The BioLINK SIG meeting has been regularly held in association with the ISMB conference (Intelligent Systems for Molecular Biology—the annual conference of the International Society for Computational Biology) since 2001, focusing on the development and application of resources and tools for biomedical text mining.

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