Abstract

RecQ helicases play an important role in preserving genomic integrity, and their cellular roles in DNA repair, recombination, and replication have been of considerable interest. Of the five human RecQ helicases identified, three are associated with genetic disorders characterized by an elevated incidence of cancer or premature aging: Werner syndrome, Bloom syndrome, and Rothmund-Thomson syndrome. Although the biochemical properties and protein interactions of the WRN and BLM helicases defective in Werner syndrome and Bloom syndrome, respectively, have been extensively investigated, less information is available concerning the functions of the other human RecQ helicases. We have focused our attention on human RECQ1, a DNA helicase whose cellular functions remain largely uncharacterized. In this work, we have characterized the DNA substrate specificity and optimal cofactor requirements for efficient RECQ1-catalyzed DNA unwinding and determined that RECQ1 has certain properties that are distinct from those of other RecQ helicases. RECQ1 stably bound to a variety of DNA structures, enabling it to unwind a diverse set of DNA substrates. In addition to its DNA binding and helicase activities, RECQ1 catalyzed efficient strand annealing between complementary single-stranded DNA molecules. The ability of RECQ1 to promote strand annealing was modulated by ATP binding, which induced a conformational change in the protein. The enzymatic properties of the RECQ1 helicase and strand annealing activities are discussed in the context of proposed cellular DNA metabolic pathways that are important in the maintenance of genomic stability.

Highlights

  • From the ‡Laboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224 and the §International Centre for Genetic Engineering and Biotechnology, Padriciano 99, I-34012 Trieste, Italy

  • DNA Substrate Specificity of RECQ1 Helicase—To determine the DNA substrate preference for RECQ1 helicase activity, we examined a series of B-form duplex DNA substrates with a variety of combinations of ssDNA or double-stranded DNA (dsDNA) tails flanking the 19-bp duplex region

  • We examined whether ATP␥S modulates RECQ1 binding to ssDNA or dsDNA to determine whether this is a component of the nucleotide inhibition of RECQ1 strand annealing

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Summary

Introduction

From the ‡Laboratory of Molecular Gerontology, NIA, National Institutes of Health, Baltimore, Maryland 21224 and the §International Centre for Genetic Engineering and Biotechnology, Padriciano 99, I-34012 Trieste, Italy. The enzymatic properties of the RECQ1 helicase and strand annealing activities are discussed in the context of proposed cellular DNA metabolic pathways that are important in the maintenance of genomic stability. Cellular processes such as DNA replication, recombination, and repair often involve steps that require unwinding of double-stranded DNA (dsDNA) to form transient single-stranded. The conserved helicase domain couples nucleotide hydrolysis to DNA unwinding, whereas the RecQ-Ct domain is suggested to be involved in protein interaction [7] and DNA binding [8]. RecQ helicases play critical roles in maintaining genomic stability as evidenced by the hyper-recombination phenotype observed in recQ mutants (for review, see Ref. 9)

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